Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01898 ATGGCCAAGCCTCAAAAACCAAAACCAAGTTGTTTCCCTGGCCTCCTACGTGTTCTTCTATGTGCTGGAAATGCAACTAGTCCTCCAGTTCACCCTTCAGATCACATCACGGAGTCAGAAGAATCACAAAATGCACACTCCACAAAAGAAAAAATGGTTGAAAATGCTCATGCTTCTACCCCTGGTGTGGTGGCAAGGCTTATGGGGCTAGATTCACTTCCAAACCCCAAATGGGCAGTGAAAGTTGGCACCCCAGATTGTTTTCCAAGAAGCAGGTCAGTGAACTTTGTTGATTACTTGCTTGAGTTTGATCCAAGCCATGCCAACCATCGTAGAGTGAAGACCTCAGCATCGTTCAGAGAGGTTCCTAGTTTGCTTATGAGGCCAAAGGGTGATGAAAAATTTGTGCTTTGCATGGATGGTGATAGTAGTAACATGAGTAAAGACCAACACCAACATGAGGTGAAGAAATTGGAGAAGGGTTTGGGAGAGTTGAGGCAGAGGAAGAGGAACAAGGAGATTGTGATTGTGGGTAGTGTGAAGAAAGAAAGGAATCAAGGGAAGAGTAAGAAGATTTCCAAGCTGAAGAATGAACCAAGAAGGGTTCCTTCAAAAAAACATGGTTCAAAGAGTCAGAAACCAAAACAATATCATGGTGAAGCTAGAGATTTGTCTTCTGTTTCCTCAAATTCTTCTAAGTGTGGTTCATGTAGTAATAGACGTAGTGGTGCTAGTTCAAGATCGAGGTTAAGCACTTCTTTGCCAAGTAAGCACAAGAAGGGGTTTGTGGAAGCAAAAGTGAAGAAGAACATGAGGAACCAAAATTCAATGTTGAAGTTAGAAAGTGAATGCAGGTTGGAAAATCACAGTCAAATTTCAGTTCAAGATAGCAATGACTATCCTTTCCTTTATGGACCTGATTTTCTCGATGGTACAAGCACCCTAGCTTCAAAGTTAAAGTGGGAATCTCCATCACTATTGTCCTTGAATGATGGTGTTGAAGACAGTGCAAGTACTACAAATAAAGGTTACTCCTTCATTGATGTCAACAAGGATGCAGAGTATTACTTTGAACTGATGTTGAAGCTTCGTACTTTAACAGAACAGGATATAACAGAGTTAAACTGTACCTCAAAACATATACGTGAGAGTGAAAGCTTTGAAGATATTTGTTTGATGTTTGAGCATAAAATTTTCGACCTTTTGTTGTATGAGGTTGTCAATGAAGTTTTAGAACTTTATTGTTGA 1248 0.403 MAKPQKPKPSCFPGLLRVLLCAGNATSPPVHPSDHITESEESQNAHSTKEKMVENAHASTPGVVARLMGLDSLPNPKWAVKVGTPDCFPRSRSVNFVDYLLEFDPSHANHRRVKTSASFREVPSLLMRPKGDEKFVLCMDGDSSNMSKDQHQHEVKKLEKGLGELRQRKRNKEIVIVGSVKKERNQGKSKKISKLKNEPRRVPSKKHGSKSQKPKQYHGEARDLSSVSSNSSKCGSCSNRRSGASSRSRLSTSLPSKHKKGFVEAKVKKNMRNQNSMLKLESECRLENHSQISVQDSNDYPFLYGPDFLDGTSTLASKLKWESPSLLSLNDGVEDSASTTNKGYSFIDVNKDAEYYFELMLKLRTLTEQDITELNCTSKHIRESESFEDICLMFEHKIFDLLLYEVVNEVLELYC 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01898 415 MobiDBLite consensus disorder prediction 27 51 - -
Cca01g01898 415 MobiDBLite consensus disorder prediction 175 205 - -
Cca01g01898 415 Coils Coil 148 168 - -
Cca01g01898 415 MobiDBLite consensus disorder prediction 222 252 - -
Cca01g01898 415 PANTHER OS05G0128300 PROTEIN 1 414 - -
Cca01g01898 415 MobiDBLite consensus disorder prediction 34 51 - -
Cca01g01898 415 PANTHER ALC-INTERACTING PROTEIN 1 1 414 - -
Cca01g01898 415 MobiDBLite consensus disorder prediction 175 260 - -
Cca01g01898 415 Pfam DUF761-associated sequence motif 58 75 IPR032795 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01898 Cca-Chr1 44516394 44518341 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01898 1 410 TRM (TON1 Recruiting Motif) Superfamily AT5G01370 26.293 2.07e-13 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01898 - - gmx:102668583 476.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g01898 01 44516394 44518341 Cca01g01898 01 44516394 44518341 ECH