Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01897 ATGGAGGGtcatcatctccatcatcatcaacaacaacggcttcatcctcaGAATATGAGTGTGAACGTGGATGGGAGTGATAGGTTTCCTCAATGGAGCATCCAAGAGACAAAGGAGTTTCTCCTGATCCGCGCAGAGCTGGATCAGACTTTTATGGAGACAAAGAGGAACAAGCAGTTGTGGGAAGTGATTTCCAACCGAATGAAGGAAAAGGGTTACCATAGaagtgcagaacagtgcaagtgcaagtggaaAAACCTTGTTACACGCTATAAGGGATTTGAAACAATGGAGCAAGAAGCGATGAGACAGCAATTCCCATTTTATAACGAATTCAATGCGATTTTCACCTCAAGGATGCAAAGAATGTTGTGGGCTGAAGCTGAGGGTGGATCGAAGAAGAAAAAGACGACGACGCCACTCTCGTCCGATGAAGAAGAATATGGCAATGATCAAGAGAGTATTGAGGCTGGTAGTGGCAGAAAGAAGAAAAAGGCAAAGATAGCTAGTGGTGGTGGTGGCAGCGGTAGTAGTAGTTTGAACAGTTTAAAGGAGATTTTGGAGGAGTTCATGAGGCAACAGATTCAAATAGAAGCACAATGGATGGAAGCATTTGAGGCAAGGGAAAATGAGAGGAGGTTGAAGGAGATGGAGTGGAGGCAAGCCATGGAGGTGTTGGAGAGTGAGAGGATAATGATGGAAGAGAGATGGAGAGAAAGGGAGGAACAAAGGAGGATTAGAGAAGAAGCTAGGGCTGAGAAGAGGGATGCTCTAATCACAGCTCTTTTGAACAAGATAGAGAGGCAATAA 810 0.4086 MEGHHLHHHQQQRLHPQNMSVNVDGSDRFPQWSIQETKEFLLIRAELDQTFMETKRNKQLWEVISNRMKEKGYHRSAEQCKCKWKNLVTRYKGFETMEQEAMRQQFPFYNEFNAIFTSRMQRMLWAEAEGGSKKKKTTTPLSSDEEEYGNDQESIEAGSGRKKKKAKIASGGGGSGSSSLNSLKEILEEFMRQQIQIEAQWMEAFEARENERRLKEMEWRQAMEVLESERIMMEERWREREEQRRIREEARAEKRDALITALLNKIERQ 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01897 269 MobiDBLite consensus disorder prediction 129 179 - -
Cca01g01897 269 MobiDBLite consensus disorder prediction 1 20 - -
Cca01g01897 269 Coils Coil 180 200 - -
Cca01g01897 269 ProSiteProfiles Myb-like domain profile. 32 88 IPR001005 -
Cca01g01897 269 Pfam Myb/SANT-like DNA-binding domain 31 115 IPR044822 -
Cca01g01897 269 Gene3D - 32 93 - -
Cca01g01897 269 PANTHER - 6 269 - -
Cca01g01897 269 CDD GT1 30 93 - -
Cca01g01897 269 PANTHER TRANSCRIPTION FACTOR MYB FAMILY-RELATED 6 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01897 Cca-Chr1 44488781 44491274 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01897 4 268 Trihelix Transcription Factor Family AT2G38250 56.985 6.81e-71 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Cca01g01897 Myb_DNA-bind_4 7.7e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01897 - - gmx:100791013 352.443
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g01897 01 44488781 44491274 Cca01g01897 01 44488781 44491274 ECH