Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01893 ATGGAAATGGCTTCCACTCCTCGCACCGTCGAAGAGATCTTTAAAGATTACAACGCTCGAAGAAACGCCATTGTTCGCGCTCTCTCTCAAGATGTGGACGAATTCTACAAACTCTGTGATCCAGATAAGGAGAACTTGTGTCTCTATGGACATCCAAATGAAACATGGGAGGTGACTTTGCCAGTAGAGGAAGTTCCACCGGAGCTTCCAGAGCCAGCACTTGGAATCAATTTTGCTAGGGATGGCATGAACCGCAGGGACTGGCTTTCTCTAGTTGCTGTGCACAGTGATTCGTGGTTGCTTTCTGTGGCTTTTTATATTGGAGCTCGTCTTAATTGCAACGAAAGGAAATATTTATTTAGCATGATCAATGATCTTCCTACTGTTTTTGAAGTTGTGTCTGAGAGGAAACAAATAAAGGACAAGCCCACTGCAGATAGTGGAAGCAAATCTAAGGGTAGTACCAAGAGATCAAGTGATGGACAAGTTAAAAGCAACCCAAAGTTTGCAGATGAAGGTTATGAGGAGGAGGATGAGCATAGTGAAACCCTTTGTGGGAGCTGTGGTGGAAATTACAATGCAGATGAATTTTGGATTGGATGTGATATATGTGAGAAGTGGTTCCATGGGAAGTGTGTGAAGATTACTCCTGCAAAAGCTGAGAGCATAAAGCAATACAAATGCCCATCATGCAACTTGAGGCGGGGCAAGCCCTAA 717 0.4393 MEMASTPRTVEEIFKDYNARRNAIVRALSQDVDEFYKLCDPDKENLCLYGHPNETWEVTLPVEEVPPELPEPALGINFARDGMNRRDWLSLVAVHSDSWLLSVAFYIGARLNCNERKYLFSMINDLPTVFEVVSERKQIKDKPTADSGSKSKGSTKRSSDGQVKSNPKFADEGYEEEDEHSETLCGSCGGNYNADEFWIGCDICEKWFHGKCVKITPAKAESIKQYKCPSCNLRRGKP 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01893 238 MobiDBLite consensus disorder prediction 148 165 - -
Cca01g01893 238 MobiDBLite consensus disorder prediction 140 173 - -
Cca01g01893 238 PANTHER CPG BINDING PROTEIN 3 236 IPR045104 GO:0006355|GO:0042393
Cca01g01893 238 CDD PHD_AL_plant 184 234 IPR044104 -
Cca01g01893 238 SUPERFAMILY FYVE/PHD zinc finger 175 236 IPR011011 -
Cca01g01893 238 ProSiteProfiles Zinc finger PHD-type profile. 182 234 IPR019787 -
Cca01g01893 238 Pfam PHD-finger 185 232 IPR019787 -
Cca01g01893 238 ProSitePatterns Zinc finger PHD-type signature. 185 231 IPR019786 -
Cca01g01893 238 Pfam Alfin 9 134 IPR021998 GO:0006355|GO:0042393
Cca01g01893 238 SMART PHD_3 184 232 IPR001965 -
Cca01g01893 238 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 1-LIKE 3 236 - -
Cca01g01893 238 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 175 232 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01893 Cca-Chr1 44253068 44260892 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01893 4 237 Alfin-like Transcription Factor Family AT5G05610 72.881 1.62e-113 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Cca01g01893 Alfin 2.8e-67 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01893 - - gmx:100793126 431.024
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g01893 01 44253068 44260892 Cca01g01893 01 44253068 44260892 ECH
Cca07g01606 07 41072571 41081691 Cca01g01893 01 44253068 44260892 PCT