Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01889 ATGGTCTTTGGCAaacaccaacacccagccaccaacaccaacaccaacGTCCGTGTCTCCTCCTCCCTCCAGGATCTCTCCTCCTACCGCCACCACCACATCGATCCCACCACCCTCGCCGTCGCCTCTTTCTCCAAAAGCAAACCCCTGCCGCGCCGGAGATgcctcctcctctccctcctgctccccctcctctacaccctctactcccgctcccacgcctccgccAAATACTACGTCGTTCTCGACCGCGACAGCACCAGCACCCACGTCTACGTCTACAAGGCCCAAATCCACCACCGCCCCAACACCAACCTCCCCATCACCATCCACTCCCTCAAAGACGGCCTCCGCCCCAACCCCGCCAGCGCCCACACCTACGACCGCATGGAGATCGAGCCTAGCCTCGACAAGCTCCTCCACAACGTCACCGCTCTAACAGCTGCCCTCAAGCCTCTTCTCCACTGGGCCCAGAAGCAGATTCCACAATGGTAA 495 0.4828 MVFGKHQHPATNTNTNVRVSSSLQDLSSYRHHHIDPTTLAVASFSKSKPLPRRRCLLLSLLLPLLYTLYSRSHASAKYYVVLDRDSTSTHVYVYKAQIHHRPNTNLPITIHSLKDGLRPNPASAHTYDRMEIEPSLDKLLHNVTALTAALKPLLHWAQKQIPQW 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01889 164 PANTHER ADENOSINE/GUANOSINE DIPHOSPHATASE 55 163 IPR000407 GO:0016787
Cca01g01889 164 Gene3D - 75 164 - -
Cca01g01889 164 Pfam GDA1/CD39 (nucleoside phosphatase) family 72 163 IPR000407 GO:0016787
Cca01g01889 164 PANTHER GDA1/CD39 NUCLEOSIDE PHOSPHATASE FAMILY PROTEIN 55 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01889 Cca-Chr1 44198186 44198680 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01889 17 163 Nodulin-like Gene Family AT4G19180 38.202 7.79e-31 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01889 - - gmx:100816548 149.058