Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01885 ATGGGTTCTCGAAACCAAGAGGTATCATGGGTGGAGAATGGTGGAAACGTGAAGGGATTGAGCAGGGAGAATAGACATGGAAGAACCGCACATAACATGTCTTCTTCTTCATTGCGCAAGAAATCTGACCTCACTCTTGTGTCTAAGGTTCGCTATGATCTTCTTAGGAACTTGTTGGCTAACTTGCAAGAGGTTATTCTTGGAACCAAGCTTGCTATTCTTTTCCCTGCTATTCCCCTTGCAATAGTTGCTCAATGGTTTGACTTTGGAAGACCATGGGTTTTTGCCTTCAGTTTACTTGGTCTTACTCCACTTGCCGAACGTGTCAGTTTCTTGACAGAACAACTTACTTATTACACTGGTCCCACAGTGGGAGGAATTTTGAATGCAACATGTGGAAATGTGACAGAGCTCATCATAGCAATTTTTGCCCTTAGCAATAACAAAATTGTTTTGGTCAAGTATTCCCTCTTGGGTTCCATAATTTCCAATCTTCTTCTTGTTCTTGGAACATCTCTATTATGTGGCGGCCTTGCAAACCTTAGACAGGAACAAAAATATGACAGAAGACAAGCAGATATGAACTTGCTGATGCTCTTTCTGGCATTGCTGTGCTACTTGCTGACACTGTTGTTCCATTATAGTGGTGCCTCAGCAAGTGACAGTACTGACTCATCTCTGCAGTTGTCAAGAGCTGCTAGCATTGTTATGGTGATTGCATATTGTGCTTACCTTGTCTTCCAACTCTGGACTCACCGGCAGCTATTTGAAGCCGAAGAAGAAGATGATGAAGAGGGTGGCAATGATTCAGAAGAAGCAGTGATAGGATTCTGGAGTGGGTTTGTTTGGCTGGCTGGAATGACTGTGATCATTGCTGTACTGTCTGAATATGTGGTGCAAACAATTGAGGATGCATCTGATTCATGGGGCTTGTCTGTTAGCTTCCTCAGCATAATCTTGCTACCAATAGTTGGAAATGCAGCTGAACATGCAGGAGCAGTCATTTTTGCTTTCAAGAACAAACTGGACATTTCGTTGGGTGTTTCCTTGGGTTCTTCAACTCAAATTAGCATGTTTGTGGTTCCACTATGTGTGATTGTTGCTTGGATTATGGGTATCAAAATGGATCTCAACTTCAACCTCCTAGAGACAGGTTCTCTTGCTTTGGCAATAATAACCACAGCCTTCACATTACAGGATGGAACTTCTCACTACATGAAAGGCCTTGTTCTCTTACTCTGCTACATTATAATTGGTGCATGCTTTTTCGTCCAAAGAACACCCTCCAACCAACTTAATGTTCCTAATATAGTGCTTAATTCAGCAACTGAAGCAGTTTTTGGAGCTTGA 1350 0.423 MGSRNQEVSWVENGGNVKGLSRENRHGRTAHNMSSSSLRKKSDLTLVSKVRYDLLRNLLANLQEVILGTKLAILFPAIPLAIVAQWFDFGRPWVFAFSLLGLTPLAERVSFLTEQLTYYTGPTVGGILNATCGNVTELIIAIFALSNNKIVLVKYSLLGSIISNLLLVLGTSLLCGGLANLRQEQKYDRRQADMNLLMLFLALLCYLLTLLFHYSGASASDSTDSSLQLSRAASIVMVIAYCAYLVFQLWTHRQLFEAEEEDDEEGGNDSEEAVIGFWSGFVWLAGMTVIIAVLSEYVVQTIEDASDSWGLSVSFLSIILLPIVGNAAEHAGAVIFAFKNKLDISLGVSLGSSTQISMFVVPLCVIVAWIMGIKMDLNFNLLETGSLALAIITTAFTLQDGTSHYMKGLVLLLCYIIIGACFFVQRTPSNQLNVPNIVLNSATEAVFGA 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01885 449 TIGRFAM cax: calcium/proton exchanger 76 423 IPR004798 GO:0006816|GO:0015369
Cca01g01885 449 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 4 437 IPR004713 GO:0006812|GO:0008324|GO:0016021
Cca01g01885 449 MobiDBLite consensus disorder prediction 15 35 - -
Cca01g01885 449 Gene3D - 266 423 IPR044880 -
Cca01g01885 449 Gene3D - 122 265 IPR044880 -
Cca01g01885 449 Pfam Sodium/calcium exchanger protein 280 418 IPR004837 GO:0016021|GO:0055085
Cca01g01885 449 Pfam Sodium/calcium exchanger protein 93 250 IPR004837 GO:0016021|GO:0055085
Cca01g01885 449 TIGRFAM caca2: calcium/proton exchanger 57 423 - -
Cca01g01885 449 PANTHER VACUOLAR CATION/PROTON EXCHANGER 3 4 437 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01885 Cca-Chr1 44094661 44099436 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01885 9 432 Antiporters AT2G38170 70.070 0.0 588
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01885 K07300 - gmx:100797538 704.516
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g01885 01 44094661 44099436 Cca01g01885 01 44094661 44099436 ECH
Cca07g01587 07 40761283 40765503 Cca01g01885 01 44094661 44099436 PCT