Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01878 ATGAAGAATGCAAAGGGTAAGGGAGCAGCGAAGACTTCAAAAGAAGCTCTGAAGCCTGTTGATGACCGAAAGGTTGGAAAGCGGAAGGCTCCTGCTAAGCCTGAAAGGAGTAGAGCACCAAAGGCAAAGAAGGAGAAGGCCAAGAAAGACCCTAACAAGCCTAAGAGACCACCCAGTGCTTTCTTTGTGTTCCTTGAGGAGTTCAGGAAGACCTTTAAGGATGAGAATCCTCATCTGAGGGGTGTAGCAGTTGTTGGGAAAGCTGGAGGAGAGAAATGGAAGTCCTTGTCCACTGCTGAGAAAGCTCCATATGAAGCCAAGGCTGCAAAAAGGAAAGTTGAGTATGAAAAACTTATGAAAGCTTATGATAAGAAGCAGGCAAGCTCTGCTGATGATGATGAATCGGACAAGTCCAAATCTGAAGTGAATGATGAAGATGATGATGCTAGTGGAGAGgaggaccaccaagaggatgatgaggaggacgacgaggaagaggatgatgaagatgatgatTGA 519 0.4027 MKNAKGKGAAKTSKEALKPVDDRKVGKRKAPAKPERSRAPKAKKEKAKKDPNKPKRPPSAFFVFLEEFRKTFKDENPHLRGVAVVGKAGGEKWKSLSTAEKAPYEAKAAKRKVEYEKLMKAYDKKQASSADDDESDKSKSEVNDEDDDASGEEDHQEDDEEDDEEEDDEDDD 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01878 172 MobiDBLite consensus disorder prediction 122 137 - -
Cca01g01878 172 SMART hmgende2 53 124 IPR009071 -
Cca01g01878 172 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 54 123 IPR009071 -
Cca01g01878 172 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 1 163 IPR031061 -
Cca01g01878 172 PANTHER HIGH MOBILITY GROUP B PROTEIN 1 1 163 - -
Cca01g01878 172 MobiDBLite consensus disorder prediction 122 172 - -
Cca01g01878 172 MobiDBLite consensus disorder prediction 8 55 - -
Cca01g01878 172 Pfam HMG (high mobility group) box 54 122 IPR009071 -
Cca01g01878 172 SUPERFAMILY HMG-box 39 123 IPR036910 -
Cca01g01878 172 MobiDBLite consensus disorder prediction 1 59 - -
Cca01g01878 172 CDD HMG-box 54 120 - -
Cca01g01878 172 MobiDBLite consensus disorder prediction 138 172 - -
Cca01g01878 172 Gene3D High mobility group box domain 38 140 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01878 Cca-Chr1 43842765 43847707 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Cca01g01878 HMG_box 1.9e-23 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01878 K25507 - gmx:100499704 189.504
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g01878 01 43842765 43847707 Cca01g01878 01 43842765 43847707 ECH