Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01877 ATGGCAACCGCGACAGCAGCCACGTCGTCCTTCATGGGGGCGCGCCTGGTGGAGGCGCAAtcggggtcgggtcgggtgcaggcgaggttcgggttcgggtcgAAGAAGAAGGCGGCGGCGAAGAAGGTGTCGAAGGGGTCGGATCGGCCGCTGTGGTACCCGGGGGCGAAGGCGCCGGAGTGGCTGGACGGGAGCCTTGTGGGAGACTACGGGTTCGATCCGTTCGGGCTGGGGAAGCCGGCGGAGTACTTGCAGTTCGAGCTGGACTCGCTGGACCAGAACCTGGCGAAGAACGAGGCGGGGGTTATCATCGGAACGAGGACGGAGGTGGCCGACGTGAAGTCGACGCCGTTTCAGCCCTACAGCGAGGTCTTCGGCTTGCAGAGGTTTAGGGAGTGCGAGCTCATTCATGGACGCTGGGCCATGCTTGCTACTCTTGGGGCTCTCACTGTTGAGTGGCTCACCGGTGTCACATGGCAGGACGCCGGCAAGGTGGAGCTAGTGGAAGGGTCATCATACCTTGGGCAACCACTTCCATTCTCAATCACCACATTGATTTGGATCGAGGTTCTGGTAATTGGCTACATTGAGTTCCAGAGGAACGCAGAGCTTGACCCAGAAAAGAGGCTCTACCCAGGTGGAAGCTACTTTGACCCATTGGGCTTGGCCTCAGACCCAGAGAAGAAAGCCACCCTGCAATTGGCAGAGATCAAGCACGCACGTCTTGCCATGGTGGGCTTCCTGGGCTTCGCAGTCCAAGCTGCTGCCACCGGCAAGGGCCCACTCAACAACTGGGCCACCCATTTGAGTGACCCACTCCACACAACCATCATTGACACCTTCTCATCCTCCTCTTAG 858 0.5641 MATATAATSSFMGARLVEAQSGSGRVQARFGFGSKKKAAAKKVSKGSDRPLWYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNEAGVIIGTRTEVADVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGSYFDPLGLASDPEKKATLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSSSS 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01877 285 PANTHER CHLOROPHYLL A-B BINDING PROTEIN CP29.2, CHLOROPLASTIC 3 284 - -
Cca01g01877 285 SUPERFAMILY Chlorophyll a-b binding protein 43 282 - -
Cca01g01877 285 Pfam Chlorophyll A-B binding protein 58 254 IPR022796 -
Cca01g01877 285 Gene3D Chlorophyll a/b binding protein domain 52 285 - -
Cca01g01877 285 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 3 284 IPR001344 GO:0009765|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01877 Cca-Chr1 43831495 43833961 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01877 12 284 Chloroplast and Mitochondria Gene Families AT3G08940 85.766 3.11e-175 483
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01877 K08915 - gmx:100785180 533.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g01877 01 43831495 43833961 Cca01g01877 01 43831495 43833961 ECH