Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01868 atgggagccgatgtggtattccgatgtccTTCTATTATTCATATTGATCTTGATACTTTGCAAAACCTTGAATCATTTAGGGATTCATTGTGTGTATTTCCACCCAAAAGTGTAAAGCTGAGAAAGCCATTTGCCATCCAACCCTGGATTAACTCAGAACAGAATGTTGGCAACCTTCTCATGGTTTGGAAATTCTTGATTACTTTTGCTGATGTCCTTGAATTATGGCCTTTTACTATTGATGAGTTTGTACAGGCATTTCATGACTATGATTCTAGATTGTTGGGTGAGATACATGTTGCTCTGCTCAAGGTGATAATAAAAGACATTGAAGATGTTGCAAGGACACCTTCTACAGGAATAGGGATGAACCAGAATGGAGCCGCTAATCCTGGAGGTGGGCATCCAGAGATTGTGGAAGGAGCATATGCATGGGGCTTTGATATACGAAATTGGCAGAAGAACTTGAATCAGTTGACATGGCCGGAAATTTTCCGGCAGTCacaggcgggcgtacgcgaaaggtcattgccccttgacgagctcggtcttaactcctcgacccacgatcttcggagctcggggggctag 591 0.3232 MGADVVFRCPSIIHIDLDTLQNLESFRDSLCVFPPKSVKLRKPFAIQPWINSEQNVGNLLMVWKFLITFADVLELWPFTIDEFVQAFHDYDSRLLGEIHVALLKVIIKDIEDVARTPSTGIGMNQNGAANPGGGHPEIVEGAYAWGFDIRNWQKNLNQLTWPEIFRQSQAGVRERSLPLDELGLNSSTHDLRSSGG 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01868 196 Pfam DDT domain 55 109 IPR018501 -
Cca01g01868 196 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT1 10 168 - -
Cca01g01868 196 SMART testlast3 53 112 IPR018501 -
Cca01g01868 196 ProSiteProfiles DDT domain profile. 53 112 IPR018501 -
Cca01g01868 196 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 10 168 IPR044977 GO:0006357
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01868 Cca-Chr1 43659209 43660453 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01868 10 167 Homeobox Transcription Factor Family AT1G28420 72.785 1.99e-82 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Cca01g01868 DDT 5.1e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01868 - - ccaj:109810123 365.155