Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01860 ATGACAACTATCGTAGCTTCGTATAATGTCACTCCAAATCAACCAACACCCATGCAACCGTTATGGCTATCCGATAGTGACCTAATCGGGAACCTAGGTCATGTATCCACAATCTACATTTACAAAGCAAAACACAGTGGGGACATCATTGAAACAATGAAGAATTCTCTTAGCAAGATTTTAGTGCCCTACTATCCAATAGCTGGTAGATTGAGATTGACAGAAAGTGGTAGAATGGAAGTGGATTGTAACGCAAAGGGAGTGACTTTGATTGAAGCTGAAACCACCAACACATTTGGTGACTATAAAGACTTTTCACCCTCCGAGTCCACCAAGGAACTTGTTCCAGAAGTTGATTATACTCAACCTATGCAGGAGCTTCCCCTACTGTTGCTGCAGTTAACAAAGTTCCATGGTGGCGAAGGCCTTGCCATTGGAGTTCTAGTGTCTCATCCTTTGGCTGATGGTATTGCCATTGCTCACTTCATCAACATATGGGCAAAGTTAGCTCGAGGAGAAACACCAGAATCTAATGAACTACCATTTCTTGATCGAAAACTACTAAAATTACCGCACCAATCAGCTCCAAGCGTTGATCTCCCGGAGTGGAAGCCTGTGCCAAAAATGCCAGGAATAGGTATAGAGCAAAACAAAAGAAGTTGTGCACTGTTGAAACTCACATCAAGCCAAGTGGAGAAGCTAAAGAAAATGGCCAACAATCAATCTATGAAAGAAGGGGCAAGACCTTATAGCACATTTGAAGTTATTTCTGCTCATATATGGAGATGTGCATCTAAGTCTCGTGAAATTGGTGGACCAACCAACTCTAGTTCGATTTAG 840 0.4214 MTTIVASYNVTPNQPTPMQPLWLSDSDLIGNLGHVSTIYIYKAKHSGDIIETMKNSLSKILVPYYPIAGRLRLTESGRMEVDCNAKGVTLIEAETTNTFGDYKDFSPSESTKELVPEVDYTQPMQELPLLLLQLTKFHGGEGLAIGVLVSHPLADGIAIAHFINIWAKLARGETPESNELPFLDRKLLKLPHQSAPSVDLPEWKPVPKMPGIGIEQNKRSCALLKLTSSQVEKLKKMANNQSMKEGARPYSTFEVISAHIWRCASKSREIGGPTNSSSI 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01860 279 Pfam Transferase family 3 269 - -
Cca01g01860 279 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 3 272 - -
Cca01g01860 279 Gene3D - 2 204 IPR023213 -
Cca01g01860 279 Gene3D - 205 279 IPR023213 -
Cca01g01860 279 PANTHER SPERMIDINE HYDROXYCINNAMOYL TRANSFERASE 3 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01860 Cca-Chr1 43471296 43474182 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01860 4 270 Monolignol Biosynthesis Gene Families AT5G48930 36.000 7.08e-54 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01860 K13065 - gmx:100814459 379.407