Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01843 ATGGAGGGTAGAGAAGAGGATGTGAGAGTTGGAGCCAACAGGTACGGAGAGAGGCAACCCATAGGAACCGCTGCACAGGGCCAACATGCCAAAGACTACAGAGAGCCACCCTCTGCGCCCTTCTTCGAGCCTCGCGAGTTTTCATCGTGGTCTTTCTATAGGGCTGGCATAGCAGAGTTTGTGGCCACCTTCTTGTTCCTTTACATCACGGTTTTAACTGTCATGGGTGTCGCCAAATCCAAGACCAAGTGTTCCACCGTTGGTGTCCAAGGCATCGCTTGGGCTTTTGGCGGCATGATCTTTGCTCTTGTTTATTGCACTGCTGGCATCTCAGGGGGTCATATTAACCCAGCAGTGACGTTTGGACTATTCTTGGCACGTAAGCTCTCTCTGACAAGGGCAATTTTCTACATAATTATGCAGTGCTTGGGTGCTATTTGTGGGGCCGCTGTAGTTAAGGGGTTCCAGCCACACCAGTATGAGAGGCTTGGTGGTGGTGCAAACACACTCAGTAAAGGGTACACCAAAGGTGATGGCCTTGGAGCAGAGATTGTTGGCACATTTGTGCTTGTTTACACTGTCTTCTCTGCCACTGATGCCAAAAGAAATGCTAGAGATTCCCATGTTCCAATTTTGGCACCACTACCTATTGGTTTTGCTGTATTTCTGGTGCATTTGGCTACAATTCCTATCACAGGTACAGGTATCAACCCTGCTAGAAGTCTAGGTGCAGCCATTGTATACAACAAGGACCAAGCTTGGGATGACCATTGGATTTTTTGGGTAGGGCCTTTCATTGGGGCAGCACTTGCAGCTCTGTACCATCAAGTAGTGATTAGGGCCATTCCCTTCTCGTCGAAGTGA 864 0.4907 MEGREEDVRVGANRYGERQPIGTAAQGQHAKDYREPPSAPFFEPREFSSWSFYRAGIAEFVATFLFLYITVLTVMGVAKSKTKCSTVGVQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAIFYIIMQCLGAICGAAVVKGFQPHQYERLGGGANTLSKGYTKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIVYNKDQAWDDHWIFWVGPFIGAALAALYHQVVIRAIPFSSK 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01843 287 PANTHER PLASMA MEMBRANE INTRINSIC PROTEIN 1 287 - -
Cca01g01843 287 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 287 IPR034294 -
Cca01g01843 287 ProSitePatterns MIP family signature. 114 122 IPR022357 -
Cca01g01843 287 PRINTS Major intrinsic protein family signature 54 73 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca01g01843 287 PRINTS Major intrinsic protein family signature 96 120 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca01g01843 287 PRINTS Major intrinsic protein family signature 133 152 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca01g01843 287 PRINTS Major intrinsic protein family signature 182 200 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca01g01843 287 PRINTS Major intrinsic protein family signature 218 240 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca01g01843 287 PRINTS Major intrinsic protein family signature 258 278 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca01g01843 287 TIGRFAM MIP: MIP family channel proteins 58 275 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca01g01843 287 CDD MIP 54 278 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca01g01843 287 Pfam Major intrinsic protein 46 275 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca01g01843 287 Gene3D Glycerol uptake facilitator protein. 39 284 IPR023271 -
Cca01g01843 287 SUPERFAMILY Aquaporin-like 45 280 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01843 Cca-Chr1 43042340 43045729 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01843 1 287 Major Intrinsic Protein MIP AT3G61430 85.366 1.48e-176 486
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01843 K09872 - gmx:100809467 543.502
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g01843 01 43042340 43045729 Cca01g01843 01 43042340 43045729 ECH
Cca07g01548 07 40129847 40132790 Cca01g01843 01 43042340 43045729 PCT