Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01835 ATGCCTTCCTCTTCGACCACCATAGTCTCCAAATGCGTCGTCCACCCCGACCAAAAGTCCGACCTTAAACCCCTCAAACTCTCGGTTTCTGATCTTCCAATGTTGTCCTGTCACTACATCCAAAAGGGCGTGTTACTCACCGCCCCACCCTCTTCCTTCGAAGACCTCATTCTCTCTCTTAAAACCTCTCTCTCCGCCGCACTCTCCCACTTCCCCGCCCTCGCCGGCCGTCTCTCCACCGACGCCCAAGGCTACGTTCACATACTCTGCAACGACGCCGGCGCCGACTTCATCCACGCCAAGGCCAAACACTTGACGCTAAACGCCGTCGTTTCGCCCTCGCTCCACGACGTCCACCCCTGCTTCAAGGAGTTCTTCGCCTACGACATGACCATCTCCTACGCCGGCCACCGCACTCCCCTCGCCGCCGTCCAGGTCACCGAGCTCGCCGACGCCCTCTTCATCGGCTGCACCGTCAACCACGCCGTCACCGACGGCACCTCCTTCTGGCACTTCTTCAACACCTTCGCCGCCCTCACCAAAGGCGGCGCCGCCAAGAAAATCCTCCGCGCGCCGGACTTCACCCGCGCCACCGTCTTCAACTCCCCCGCAGTCCTCCACGTCCCCGCCTCCGGCCCCGCCCTCACCTTTGACGCCGACGAACCCCTCCGCGAACGCGTCTTCCACTTCTCCCGCGAAGCTATTCAGAAACTCAAACTTAGAGCCAACGCCAACAACAACGAACTAACGGAAGTAGTTGGAAAACAAGTAAATGACGGTTGGAAAATcgttaacgttaacggtaacggtaacgctaacggaaaggttaacggAAGAAACGAGATCTCGTCGTTTCAGTCGTTATCGGCTCAGCTCTGGCGCGCGGTGACACGTGCGAGGAAATTCGAAAACCCGGCGAAAACGTCGACGTTTCGCATGGCGGTTAATTGCCGGCACCGTTTGGAGCCGAAGATGGACGCGTTCTACTTCGGGAACGCGATTCAGAGTATTCCAACGGTTGCGACCGTGGGCGATATTCTCTCGCGCGATCTGCGTTTCTGCGCGGAGTTGCTGCACCGGAACGTGGTGGCGCACGACGACGCTACGGTGCGGCGCGGCGTAGAGGATTGGGAGAAGGCGCCGAGGCTGTTTCCTCTAGGGAACTTCGACGGCGCGATGATCACGATGGGGAGTTCGCCGCGTTTTCCGATGTACGAGAACGACTTCGGGTGGGGGAGGCCGGTGGCGATTCGGAGCGGAAAGGCGAACAAGTTCGACGGCAAGATCTCTGCGTTTCCCGCGAGAGAGGGAAACGGCAGCGTGGATTTGGAAGTCGTTTTGGCCCCCGAGACCATGGCGGGGCTCGAAAACGACATGGAGTTTATGCAGTACGTAACGCAGGCCGTGTGA 1410 0.5759 MPSSSTTIVSKCVVHPDQKSDLKPLKLSVSDLPMLSCHYIQKGVLLTAPPSSFEDLILSLKTSLSAALSHFPALAGRLSTDAQGYVHILCNDAGADFIHAKAKHLTLNAVVSPSLHDVHPCFKEFFAYDMTISYAGHRTPLAAVQVTELADALFIGCTVNHAVTDGTSFWHFFNTFAALTKGGAAKKILRAPDFTRATVFNSPAVLHVPASGPALTFDADEPLRERVFHFSREAIQKLKLRANANNNELTEVVGKQVNDGWKIVNVNGNGNANGKVNGRNEISSFQSLSAQLWRAVTRARKFENPAKTSTFRMAVNCRHRLEPKMDAFYFGNAIQSIPTVATVGDILSRDLRFCAELLHRNVVAHDDATVRRGVEDWEKAPRLFPLGNFDGAMITMGSSPRFPMYENDFGWGRPVAIRSGKANKFDGKISAFPAREGNGSVDLEVVLAPETMAGLENDMEFMQYVTQAV 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01835 469 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 5 466 - -
Cca01g01835 469 Pfam Transferase family 6 462 - -
Cca01g01835 469 Gene3D - 221 462 IPR023213 -
Cca01g01835 469 PANTHER ANTHOCYANIN 5-AROMATIC ACYLTRANSFERASE 5 466 - -
Cca01g01835 469 Gene3D - 6 209 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01835 Cca-Chr1 42827474 42830034 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01835 60 457 Monolignol Biosynthesis Gene Families AT5G48930 26.905 4.55e-33 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01835 - - gmx:100780358 833.558
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01573 05 34972824 34974783 Cca01g01835 01 42827474 42830034 ECH
Cca01g01835 01 42827474 42830034 Cca01g01835 01 42827474 42830034 ECH