Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01834 ATGAACAGGGGAATTGAAGTTGTTCTTTCTCCAGCCTCTTACCTTCAGAGTTCCAATTGGTTGTTCCAAGAAAGCTTGGGGACCCGGTGGACTCCACAGGAGAACAAGCTGTTTGAGAATGCTTTGGCCGTGTATGATAAGGACACTCCAGACCGGTGGCTCAAGGTGGCAGCCTTGATTCCTGGCAAGACTGTTGGTGATGTGATCAAACAGTACAGAGAACTGGAAGAAGATGTGAGTGTCATTGAATCAGGGTTTATACCAGTTCCGGGCTACACCACTGATTCCTTCACATTGGAGTGGGTCAACAATCAAGGATTTGATGGCTTCAAGCAGTTCTATAGTGTTACTGGAAAAAGGGGTGCTTCCACTAGACCATCTGAGCAGGAGAGAAAGAAAGGAGTGCCATGGACTAAAGAGGAACACAGGCAATTTCTGATGGGTTTGAAGAAGTATGGTAAAGGAGACTGGAGAAACATATCTCGCAATTTTGTGACCACAAGGACACCAACTCAGGTTGCAAGTCATGCTCAAAAGTATTTCATTAGACAACTAAGTGGAGGAAAGGATAAAAAGAGATCCAGTATCCATGACATCACAATGGTCAATCTCCAAGAAACAAAATCTCCTTCACCAGAAAGTAACAAACCCCCTTCACCAGATCACTCAGTGAAGGATGTGAATCCACCCCAGAGCCAGAGATTGTCTACTACCACCATGGTTAAACAGGAATATGATTGGAAAATGCCATGTGAGAATGTGCCTATGCTTTTCAATTCCTCAAATGGAAACATGTTCGTGACACCACTTTGTGGGATTTCTTCATATGGGTCTAAACCACTTCATGAGCAGCATTTGTTCACTGGCTCTCTCCATGGATGCCAATTTGGACCCTATGATACTATTATGCAAATGCAGTCCATGCAAAATCAATGA 936 0.4391 MNRGIEVVLSPASYLQSSNWLFQESLGTRWTPQENKLFENALAVYDKDTPDRWLKVAALIPGKTVGDVIKQYRELEEDVSVIESGFIPVPGYTTDSFTLEWVNNQGFDGFKQFYSVTGKRGASTRPSEQERKKGVPWTKEEHRQFLMGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKYFIRQLSGGKDKKRSSIHDITMVNLQETKSPSPESNKPPSPDHSVKDVNPPQSQRLSTTTMVKQEYDWKMPCENVPMLFNSSNGNMFVTPLCGISSYGSKPLHEQHLFTGSLHGCQFGPYDTIMQMQSMQNQ 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01834 311 Gene3D - 23 89 - -
Cca01g01834 311 CDD SANT 29 75 IPR001005 -
Cca01g01834 311 SUPERFAMILY Homeodomain-like 130 184 IPR009057 -
Cca01g01834 311 MobiDBLite consensus disorder prediction 204 236 - -
Cca01g01834 311 ProSiteProfiles SANT domain profile. 137 185 IPR017884 -
Cca01g01834 311 ProSiteProfiles Myb-like domain profile. 129 181 IPR001005 -
Cca01g01834 311 Pfam Myb-like DNA-binding domain 136 181 IPR001005 -
Cca01g01834 311 PANTHER TRANSCRIPTION FACTOR DIVARICATA 8 246 - -
Cca01g01834 311 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 8 246 IPR043363 -
Cca01g01834 311 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 129 185 IPR017930 -
Cca01g01834 311 SMART sant 133 183 IPR001005 -
Cca01g01834 311 SMART sant 26 78 IPR001005 -
Cca01g01834 311 Gene3D - 135 185 - -
Cca01g01834 311 ProSiteProfiles SANT domain profile. 25 80 IPR017884 -
Cca01g01834 311 CDD SANT 136 181 IPR001005 -
Cca01g01834 311 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 132 184 IPR006447 GO:0003677
Cca01g01834 311 SUPERFAMILY Homeodomain-like 28 84 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01834 Cca-Chr1 42742172 42744961 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca01g01834 Myb_DNA-binding 4.5e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01834 - - gmx:778077 554.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01567 05 34834403 34836859 Cca01g01834 01 42742172 42744961 ECH
Cca07g01537 07 39782663 39785324 Cca01g01834 01 42742172 42744961 ECH
Cca01g01834 01 42742172 42744961 Cca05g01567 05 34834403 34836859 ECH
Cca01g01834 01 42742172 42744961 Cca01g01834 01 42742172 42744961 ECH
Cca05g01238 05 29957638 29960043 Cca01g01834 01 42742172 42744961 ECH
Cca01g00715 01 9365367 9368115 Cca01g01834 01 42742172 42744961 ECH
Cca01g01834 01 42742172 42744961 Cca05g01238 05 29957638 29960043 ECH
Cca01g01834 01 42742172 42744961 Cca01g00715 01 9365367 9368115 ECH