Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cca01g01834 | ATGAACAGGGGAATTGAAGTTGTTCTTTCTCCAGCCTCTTACCTTCAGAGTTCCAATTGGTTGTTCCAAGAAAGCTTGGGGACCCGGTGGACTCCACAGGAGAACAAGCTGTTTGAGAATGCTTTGGCCGTGTATGATAAGGACACTCCAGACCGGTGGCTCAAGGTGGCAGCCTTGATTCCTGGCAAGACTGTTGGTGATGTGATCAAACAGTACAGAGAACTGGAAGAAGATGTGAGTGTCATTGAATCAGGGTTTATACCAGTTCCGGGCTACACCACTGATTCCTTCACATTGGAGTGGGTCAACAATCAAGGATTTGATGGCTTCAAGCAGTTCTATAGTGTTACTGGAAAAAGGGGTGCTTCCACTAGACCATCTGAGCAGGAGAGAAAGAAAGGAGTGCCATGGACTAAAGAGGAACACAGGCAATTTCTGATGGGTTTGAAGAAGTATGGTAAAGGAGACTGGAGAAACATATCTCGCAATTTTGTGACCACAAGGACACCAACTCAGGTTGCAAGTCATGCTCAAAAGTATTTCATTAGACAACTAAGTGGAGGAAAGGATAAAAAGAGATCCAGTATCCATGACATCACAATGGTCAATCTCCAAGAAACAAAATCTCCTTCACCAGAAAGTAACAAACCCCCTTCACCAGATCACTCAGTGAAGGATGTGAATCCACCCCAGAGCCAGAGATTGTCTACTACCACCATGGTTAAACAGGAATATGATTGGAAAATGCCATGTGAGAATGTGCCTATGCTTTTCAATTCCTCAAATGGAAACATGTTCGTGACACCACTTTGTGGGATTTCTTCATATGGGTCTAAACCACTTCATGAGCAGCATTTGTTCACTGGCTCTCTCCATGGATGCCAATTTGGACCCTATGATACTATTATGCAAATGCAGTCCATGCAAAATCAATGA | 936 | 0.4391 | MNRGIEVVLSPASYLQSSNWLFQESLGTRWTPQENKLFENALAVYDKDTPDRWLKVAALIPGKTVGDVIKQYRELEEDVSVIESGFIPVPGYTTDSFTLEWVNNQGFDGFKQFYSVTGKRGASTRPSEQERKKGVPWTKEEHRQFLMGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKYFIRQLSGGKDKKRSSIHDITMVNLQETKSPSPESNKPPSPDHSVKDVNPPQSQRLSTTTMVKQEYDWKMPCENVPMLFNSSNGNMFVTPLCGISSYGSKPLHEQHLFTGSLHGCQFGPYDTIMQMQSMQNQ | 311 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cca01g01834 | 311 | Gene3D | - | 23 | 89 | - | - | |
Cca01g01834 | 311 | CDD | SANT | 29 | 75 | IPR001005 | - | |
Cca01g01834 | 311 | SUPERFAMILY | Homeodomain-like | 130 | 184 | IPR009057 | - | |
Cca01g01834 | 311 | MobiDBLite | consensus disorder prediction | 204 | 236 | - | - | |
Cca01g01834 | 311 | ProSiteProfiles | SANT domain profile. | 137 | 185 | IPR017884 | - | |
Cca01g01834 | 311 | ProSiteProfiles | Myb-like domain profile. | 129 | 181 | IPR001005 | - | |
Cca01g01834 | 311 | Pfam | Myb-like DNA-binding domain | 136 | 181 | IPR001005 | - | |
Cca01g01834 | 311 | PANTHER | TRANSCRIPTION FACTOR DIVARICATA | 8 | 246 | - | - | |
Cca01g01834 | 311 | PANTHER | DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED | 8 | 246 | IPR043363 | - | |
Cca01g01834 | 311 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 129 | 185 | IPR017930 | - | |
Cca01g01834 | 311 | SMART | sant | 133 | 183 | IPR001005 | - | |
Cca01g01834 | 311 | SMART | sant | 26 | 78 | IPR001005 | - | |
Cca01g01834 | 311 | Gene3D | - | 135 | 185 | - | - | |
Cca01g01834 | 311 | ProSiteProfiles | SANT domain profile. | 25 | 80 | IPR017884 | - | |
Cca01g01834 | 311 | CDD | SANT | 136 | 181 | IPR001005 | - | |
Cca01g01834 | 311 | TIGRFAM | myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class | 132 | 184 | IPR006447 | GO:0003677 | |
Cca01g01834 | 311 | SUPERFAMILY | Homeodomain-like | 28 | 84 | IPR009057 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Cca01g01834 | Cca-Chr1 | 42742172 | 42744961 | Dispersed/Wgd |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | MYB | Cca01g01834 | Myb_DNA-binding | 4.5e-12 | CL0123 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cca01g01834 | - | - | gmx:778077 | 554.673 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Cca05g01567 | 05 | 34834403 | 34836859 | Cca01g01834 | 01 | 42742172 | 42744961 | ECH | |
Cca07g01537 | 07 | 39782663 | 39785324 | Cca01g01834 | 01 | 42742172 | 42744961 | ECH | |
Cca01g01834 | 01 | 42742172 | 42744961 | Cca05g01567 | 05 | 34834403 | 34836859 | ECH | |
Cca01g01834 | 01 | 42742172 | 42744961 | Cca01g01834 | 01 | 42742172 | 42744961 | ECH | |
Cca05g01238 | 05 | 29957638 | 29960043 | Cca01g01834 | 01 | 42742172 | 42744961 | ECH | |
Cca01g00715 | 01 | 9365367 | 9368115 | Cca01g01834 | 01 | 42742172 | 42744961 | ECH | |
Cca01g01834 | 01 | 42742172 | 42744961 | Cca05g01238 | 05 | 29957638 | 29960043 | ECH | |
Cca01g01834 | 01 | 42742172 | 42744961 | Cca01g00715 | 01 | 9365367 | 9368115 | ECH |