Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01828 ATGCTTATTTTCTTCTTTGTTTTTCTCGGGTCCTTCAGCTTAGGCTTGGGGTTTCTCTTCCTCTTCAACGAGCCACAACAACAACAACGTTATCATAACCATGCACCTCCTTCACACCCCATCATTGGATGCCTCGTTTCCTTTTACCAAAACCGCCACCGTCTCCTCGATTGGTACACCCACCACTTGGCCCAATCCCCCACGCAAACCATCGTCGTGCGCCGCCTCGGCGCGCGCCGCACGGTGGTGACGGCGAACCCCCACAACGTGGAGTACATCCTGAAGACCAACTTCGGCAACTTCCCCAAAGGCAAACCCTTCACCGAAATCCTCGGCGACCTTCTCGGCTGCGGCATATTCAACGTCGACGGCGAGTTGTGGCACGCGCAGCGCAAGTTAGCCAGCCACGAGTTCACCACGCGCTCCCTCAGAGACTTCATCGTCAAAACCCTCAACGAAGAGGTTCACAATAGGCTTCTCCCACTCTTGGATTGGGCCGCACGTGGGGGCCACGTGATCGACCTTCAAGACGTCCTGCGGAGACTCACCTTTGATACGGTGTGCAAGGTGTCGTTAGGGTACGACCCCTGTTGTTTGGATTTGTCGAAGCCCTTGCCGCCTCTCTTGACGGCGTTTGACACGGCTTCGGAGATTAGCGCGGCGCGCGCCGCCGCGCCGGTGTTTGTGGTGTGGAAGATGAAGAGGATGTTTGACATGGGGTCGGAGAAGTCGCTGAAGGAAGCGGTGAAGCTGGTGCACGAGTCGGTGACGGAGATTATagcaacaaaaaagaaggaaataaagaaagggaaaaaaagCATGGATTTACTTGTTCGGTTGTTGGAGGCGGGGCAATCGGAAACGTTGGTAAGAGACATGGTTATAAGCATGATAATGGCGGGGAGGGACACGACTTCGGCGGCGATGACGTGGCTGTTTTGGTTGCTATCGAAGCAGCGAGAGGAAGAGGAGATGATAGTGAAAGAGGTGAGTGAGAAGGGTTTGCGTTTGGACTACGAGTGGTTGAAAGAGATGAGGTTTCTGAAGGCGTGTTTGTGCGAGTCCATGAGGCTGTACCCTCCGGTTGCGTGGGACTCGAAGCATGCGATTGGTGCTGACGTGTTACCCGATGGGACTCGCGTGGGGAAAGGGGATAGGGTTACTTATTTTCCGTATGGCATGGGGAGAATGGAGGCTCTGTGGGGGAAGGATTGTTTGGAGTTCAAACCCCAACGGTGGTTCCATGAAGATAATGTTGATAATGGAATTGTCAAGTGTGTGAATCCTTACATGTTCGCGGTGTTTCAGGCGGGTCCTAGAGTGTGTCTTGGGAGGGAAATGGCTTTCATTCAGATGGAGTATGTGGTCGCTTCTATTCTTAAATCGTTTGTTATTTCGCCGGTTTCTGATGAGCACCCTCGTTTTGTTCCTCTTCTGACGGCTCATATGGCTGGGGGGTTCAAAGTGAGGGTCCACAACAGATCAACTAGTGGAACGGAGACTGAGAAGTTAGAGTGA 1518 0.5204 MLIFFFVFLGSFSLGLGFLFLFNEPQQQQRYHNHAPPSHPIIGCLVSFYQNRHRLLDWYTHHLAQSPTQTIVVRRLGARRTVVTANPHNVEYILKTNFGNFPKGKPFTEILGDLLGCGIFNVDGELWHAQRKLASHEFTTRSLRDFIVKTLNEEVHNRLLPLLDWAARGGHVIDLQDVLRRLTFDTVCKVSLGYDPCCLDLSKPLPPLLTAFDTASEISAARAAAPVFVVWKMKRMFDMGSEKSLKEAVKLVHESVTEIIATKKKEIKKGKKSMDLLVRLLEAGQSETLVRDMVISMIMAGRDTTSAAMTWLFWLLSKQREEEEMIVKEVSEKGLRLDYEWLKEMRFLKACLCESMRLYPPVAWDSKHAIGADVLPDGTRVGKGDRVTYFPYGMGRMEALWGKDCLEFKPQRWFHEDNVDNGIVKCVNPYMFAVFQAGPRVCLGREMAFIQMEYVVASILKSFVISPVSDEHPRFVPLLTAHMAGGFKVRVHNRSTSGTETEKLE 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01828 505 SUPERFAMILY Cytochrome P450 36 494 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca01g01828 505 PRINTS E-class P450 group IV signature 291 317 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca01g01828 505 PRINTS E-class P450 group IV signature 345 361 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca01g01828 505 PRINTS E-class P450 group IV signature 442 460 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca01g01828 505 PANTHER CYTOCHROME P450 26 492 - -
Cca01g01828 505 Pfam Cytochrome P450 36 473 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca01g01828 505 Gene3D Cytochrome P450 24 497 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca01g01828 505 PANTHER CYTOCHROME P450 94B3 26 492 - -
Cca01g01828 505 PRINTS P450 superfamily signature 300 317 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca01g01828 505 PRINTS P450 superfamily signature 350 361 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca01g01828 505 PRINTS P450 superfamily signature 433 442 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca01g01828 505 PRINTS P450 superfamily signature 442 453 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01828 Cca-Chr1 42621207 42622724 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01828 2 495 Cytochrome P450 AT3G48520 59.400 0.0 591
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01828 K20665 - gmx:100810294 785.793