Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01826 ATGGATGACTCAAGAAACAGCCCATTACATAAGTTCCGTTATGACCTAAATTTATCGCCTCTGGACGATGATCTAGAGATCACCTTGGAAAGGAGAATCCatgaagtgttcttgagcttcagaggggaggacacacgtgcttctttcgtttcacatctctatgcctctcttcggaatgctggaatcaatgttttcaaggatgatgagtcacttccaaggggagatcacatttcagactcattgctgcgagcaattcagcagtctgaaattagtgttgttgtattctcaagaaactatgcagggtctcgatggtgtttggatgagttaaacaaaataatggagtgtcacagaaccatagggcaggttgttttgccagtgttctatgatgttgatccctctgaagtgcgtcatcaaaaaggtgagtttggaaaagcatttgaaaaacTGGAGAACTGGATTTTAAAAGGTGATGAGATGCTCAGCTTGACTGTATGGGAGAGAGAGAAGGTGCCGGGTTGGAGGGAGGCACTTTGTCAGGCTGCTGGCATCGCTGGGATTGTAGTCCTAAATTCAAGGAATGAAAGGGAGGATATAGAAAACATTGTTGAAACTGTTATGCGTCATTTAGACAAGACAgaattgtttgttgctgataatccagtgggagtagaacctcgggtacaagaaatgattcagctgcttgaccagaaactatcaaatgatgttctactaatcgggatgtgggggatgggtggcattggtaaaacaaccattgcaaaagccatttataataagattggccgtaattttgagggaaggagcttccttgcacatattagggaagtttgggagcaagatgctggacaagtccatttacaagaacaaattctatatgatatcttcaaagaaacaaaagcaaagatacctaacatggaattaggaaaaaatatgttgaaggatagactatgccataaaagggtacttcttgtacttgatgatgtgaatgaattggagcaattgaatgctttgtgtgggagtcgtgaatggtttggttctgggagtagaataatcatcaccactagagataagcatatacttagagggagaagagttgacaatgtgcacataatgaagagaatggatgaaggtgaatcaattgagctttttagttggcatgcattcaagcaagcaagtcctagtgaaaagtttatcgaacttactagaaatgtaattgaatattctgggggattgcctctagcacttgaagtgcttgggtcttatttgtttgaaatggatgtaacagagtgggagaatgtattggagaaactaaagagaattcctaatcatcaagtacaaaagaagttaaaaataagctatgatggtttaagtgatgatacagagagagaaatattccttgatatagcttgtttctttattggaatggatcgtaacgatgttataactatattaaatggttgtggactattcgcagaaaatggaatacgtgtccttgtagagcggtgccttgtaattgttgatgataagaacaagcttggaatgcatgatttgctacgagacatgggaagagaaattattcgtgaaaagtcaccaaaggaacctgaggaacgtagcaggttatggtttcacgaggatgtgcttgaagtattatcaaaagaaacaggaacaaaagctattgagggattggttttgaagttaccaagaactaatacaaaatgtttgagaactaaagcttttaagaagttgaagaaactcagattgcttcaacttgctagtgtacaacttgttggagattttgactatctctcaagagatcttagatggctttgttggcaagaatttcctttaagatgtataccaacaaacttttatcaaggaagcctagttTCTATTGAGTTACTAAACAGTAATGTTAAATTTGTGTGGAAAGAGACCCAGctgatggataaactaaaaattctcaatcttagtcattctcattatttaagacagactccagacttttcaaattttcctaatcttgaaaaactagtactcatagattgtccaatgttgtctgaggtttcccataccattggatgtctcaataaagttcttataataaacttgagagattgtattggccttcgtaaccttccaagaagtatctataaattgaaatctcttaagacactcgttctttctggatgtttaaagattgacaagttggaagaagattttgaacaaatggagtctttgacaacctttcttgcagataaaacggcaataacaaaagtgccattttcaataataagatcaaaaaaCATTGGATATATTTCATTGTGCGGATATGAAGGGTTCTCCCGTGATGTGTTCCCTTCTATCATTTGGTCTTGGATGTCACCAATGAGTAGTCTCTCACCTCACATTGAAACATTTGCGGGCATGTCATCCGTCATTCCATTAGATTTGGCAATTAGTAATTCCCATCATTTATTATCTATTTCCAAGGAACTTTCAAAACTTCGAAGTCTTTGGATAGAATGCGACTCTGAACTTCAACTATCTCAAAATGCAACAAATATTTTAGATGCTTTATATAACACGACTTCTAAGGATTTGGAATCATATGCAACTTCATCACAGATATCGAATATGAATGCTTCAGCCTCGTGCATCCGGAAAATGCACTTTTCAAGATCAAAAAGTTCCATAGGATCTCTTTTATTTCAAATGGGAATGAGTTGTGAAGTGACCTGTACTCTGGAACAGAACATTTTACAGAATATGTCTAGTAGTGAGCACGGTGGTTGTTTGGTCCCCGGTGATAGTTATCCAGATTGGTTAGCTTTCAGCAGTGAAGGTTCATCTGTGATTTTTGAAATCCCTCAAGTGAATAGACATAACTTAAAGACAATGATATGTCATGTCCATTATTCTTCCCCAGACAATGTAACATCAGATGACCTAAAAAATTTGTTGGTGAAAAATCACACAAAAGCCACCATTTTCCTTTACAAGGGAGATGCATTGGCCTCCTTTGAAGATGAGGAGTGGCAGAGGGTAGTATCAAATATAGAGCCTGGTAACAAAGTGGAAATTGTTGTTGTTTTTGGGAAACGGTTGATTGTGAACAAGACAACAATTTACCTTGTATATGAGCCAATGGTTGAAAAAGTGGAGCACTGCCGTTCACCAAATGAGAATGTCATTGCTTCTAGTGATGATGAAATGAATGAGGTCAAGTCGATCTGTTCTCAAGTGGAACCCATGGATGACTTGAAGCAAAAACACAAAAGAAGAAAATTTGAGTAA 3312 0.1576 MDDSRNSPLHKFRYDLNLSPLDDDLEITLERRIHEVFLSFRGEDTRASFVSHLYASLRNAGINVFKDDESLPRGDHISDSLLRAIQQSEISVVVFSRNYAGSRWCLDELNKIMECHRTIGQVVLPVFYDVDPSEVRHQKGEFGKAFEKLENWILKGDEMLSLTVWEREKVPGWREALCQAAGIAGIVVLNSRNEREDIENIVETVMRHLDKTELFVADNPVGVEPRVQEMIQLLDQKLSNDVLLIGMWGMGGIGKTTIAKAIYNKIGRNFEGRSFLAHIREVWEQDAGQVHLQEQILYDIFKETKAKIPNMELGKNMLKDRLCHKRVLLVLDDVNELEQLNALCGSREWFGSGSRIIITTRDKHILRGRRVDNVHIMKRMDEGESIELFSWHAFKQASPSEKFIELTRNVIEYSGGLPLALEVLGSYLFEMDVTEWENVLEKLKRIPNHQVQKKLKISYDGLSDDTEREIFLDIACFFIGMDRNDVITILNGCGLFAENGIRVLVERCLVIVDDKNKLGMHDLLRDMGREIIREKSPKEPEERSRLWFHEDVLEVLSKETGTKAIEGLVLKLPRTNTKCLRTKAFKKLKKLRLLQLASVQLVGDFDYLSRDLRWLCWQEFPLRCIPTNFYQGSLVSIELLNSNVKFVWKETQLMDKLKILNLSHSHYLRQTPDFSNFPNLEKLVLIDCPMLSEVSHTIGCLNKVLIINLRDCIGLRNLPRSIYKLKSLKTLVLSGCLKIDKLEEDFEQMESLTTFLADKTAITKVPFSIIRSKNIGYISLCGYEGFSRDVFPSIIWSWMSPMSSLSPHIETFAGMSSVIPLDLAISNSHHLLSISKELSKLRSLWIECDSELQLSQNATNILDALYNTTSKDLESYATSSQISNMNASASCIRKMHFSRSKSSIGSLLFQMGMSCEVTCTLEQNILQNMSSSEHGGCLVPGDSYPDWLAFSSEGSSVIFEIPQVNRHNLKTMICHVHYSSPDNVTSDDLKNLLVKNHTKATIFLYKGDALASFEDEEWQRVVSNIEPGNKVEIVVVFGKRLIVNKTTIYLVYEPMVEKVEHCRSPNENVIASSDDEMNEVKSICSQVEPMDDLKQKHKRRKFE 1103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01826 1103 SMART AAA_5 241 381 IPR003593 -
Cca01g01826 1103 Gene3D - 29 214 IPR035897 -
Cca01g01826 1103 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 40 1050 IPR044974 GO:0006952
Cca01g01826 1103 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 211 474 IPR027417 -
Cca01g01826 1103 SMART till_3 33 183 IPR000157 GO:0007165
Cca01g01826 1103 PANTHER RCT1-LIKE RESISTANCE PROTEIN, PUTATIVE-RELATED 40 1050 - -
Cca01g01826 1103 PRINTS Disease resistance protein signature 244 259 - -
Cca01g01826 1103 PRINTS Disease resistance protein signature 321 335 - -
Cca01g01826 1103 PRINTS Disease resistance protein signature 414 428 - -
Cca01g01826 1103 PRINTS Disease resistance protein signature 723 739 - -
Cca01g01826 1103 ProSiteProfiles TIR domain profile. 32 209 IPR000157 GO:0007165
Cca01g01826 1103 Gene3D - 215 376 IPR027417 -
Cca01g01826 1103 Gene3D Ribonuclease Inhibitor 559 787 IPR032675 -
Cca01g01826 1103 SUPERFAMILY L domain-like 520 847 - -
Cca01g01826 1103 Pfam NB-ARC domain 226 459 IPR002182 GO:0043531
Cca01g01826 1103 SUPERFAMILY Toll/Interleukin receptor TIR domain 30 185 IPR035897 -
Cca01g01826 1103 Pfam TIR domain 34 205 IPR000157 GO:0007165
Cca01g01826 1103 Gene3D - 380 463 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01826 Cca-Chr1 42540035 42549215 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01826 41 769 WRKY Transcription Factor Family AT4G12020 30.563 4.40e-80 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01826 - - gmx:100808753 1512.28