Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01824 ATGTCTTCCATTTTTGCCCCCGGTTACTCTTTTAACATTCCCGACTTTGAGGTCAACGAGGCCGTCGGCGGGTGTATGCCTGAGACTCCGGAAGATAGTGGAGCATATGGGAGAATCCatgaagtgttcttgagcttcagagtgcgccatcaaaaaggcgagtttggaaaagcactcgaaaaacttcaggagaggatTTTAAGCTACGTGAATGAGGAGTTTCCGCAATTGGTGCGTGGGATTGGTGACAAATCGGAAGTGATGGATTCCCGATTGAAGGTCATGTTCCCGAATTGTAGGAAGGCACTTCGTGAGGCCGCTGGCATGTCAGGTGTTGTAGTACTCAACTCCAGAAATGAAAGGGAGACTATAAAAAATATTGTTGAAAATGTTGCACATTTGTTAGACAAGACAgagttatttgttgccaataatccagtgggagtagaacctcgagtacaagcaatgagtcaattgctactccaaaaatcatcaaatgatgtcctactattagggatgtgggggatgggaggcattggtaaaacaaccattgctaaagccatttacaataagattggccgcaattttgagggaaggagcttccttgcaaatatcagggaagtttggaggcaagacgttggccaagtcaatttacaagaacaacttctgtctgatatcaacaaagaaacaaaaataacgatacataatgctgaatcaggaaaaaatatattaaaaaaaatactttgctataaaaaggtacttcttgtattggatgatgtgaatgaattggaccaactaaatgctttatgtggaagttacaaatggtttggtccaggtagtagaataatcattaccactagagatcaagatatactcagagggagagttgacatagtatatacaatgaaaggcatggatgaaggtgaatccattgagctttttagttggcacgcattcaagcaagcaagtcctaaagaaaattttacccaactttctagaaatgtaattacgtattccgggggattgccactagcccttgaagtgcttgggtgttatttgtttgatatgaaggtagcagagtgggagaatgtattggagaaacttaagagaattcctaatcatcaagtacaaaagaagttaaaaataagctatgatggtttaaatgatgatactgagagagatatattcctcgatatagcttgtttctttattggcatggatcggaatgatgttatacatatattaaatggttgtgggcttttcgcagaaaatggaatacgtgtccttgtagagcgaagccttgtaacaattgataataaaaacaagcttcgaatgcatgatttgataagggacatgggaagggaaatcgttcgtgcaaattcactaaaggttcttgagaagcgtagcaggttatggtttcatgaggatgcgcttgatgtattagcaaaagaaacgggaacagaagctattgagggactggctttgaggttatcaataaataatgcaacatgtttgagcactaaagcttttaaaaacatggagaaacttaggttgcttcaacttgctggtgtaagacttgatggagattttaaatatctttccaaagatcttagatggctgtgttggcatggatttcctttaaaatacataccaacaaacttttatcaaAGAAATCTTATTTCAATTGAGTTACAAAACAGTAATGTTCAACTTGTGTGGAAAGAAGCTCAGcggatggagaaacttaaaattctcaatcttagtcattctcattctttaacacagactccagacttttcaaaattgcctagtcttgaaaagttagaactcatagattgtccaaaattgtctaagatttctcataccattggacatctcaatcgaattcttcgaataaatttgcaagattgtattagtcttcataaccttccaaggagtatttataaattgaaaacccttaaaacactcattctttcaggatgttcaaagattgacaagttggaagaagacttggaacaaatggagtctttgacaatccttgttgcagataagactgcaataaaaagaattccgttttcaattgtaaggtcaaaaaGCATTGGATATATTTCTTTATGTGGTTATGAAGGATTCTCGCGTGATGTGTTTCCTTCTATCATTTGGTCTTGGATGTCACCAACCAATAGTCTCTCATCCTGCATTCAAACATCTGTGGGAAAGTCATCTCTTGTTTCTTTAGATGTGCCAAATAGCAGTTCTCATCATCTATCATATATTTTAGAGAACCTTCCAAAGCTTGAAAGTCTTTGCATAGAGTGCGACTCAAAACTTCAACTAACTCAAGAAGCAAAAAATATTATAGATGCCTTATATGCCACAAATTCTGAGGATTTAGAATCAACTACAACTCCCTTAGAAATGCCAGACATTGATGCTTCTACATTAATTGAATGCAACAAACATGCACACACTTCAGGGTCACAAAAATTGTTGGCATGTCATTTAATTCAAATGGGAACAAGTTGCCGAGTCACTTATATTCTGAGACAAAGCATTTTACAGAATAAAAGTACTGGTGATTGCAATTATGTGCTCCCTGGTGATAATTATCCAGAATGGTTAACATTTGACAACCAAGGTCGACCTCTCCTAAAGTGTGCACTCAATTTGGTCACGGTGGCAATGGTAAACGAGGTTGCTTTGGCCGAAGAGGTGGCCATGATGGTCATAGCAATGTTCAATGTCAAGTATGCAATAAAATTGGCCACATTGCTACCAATTGCTATCATCGTTTTGATCCCAATTATGATGCTCCAGGCAATTTTCAGTTTCAGAATCAATTCCCTCAACAGCAACAATTTCACTTCTTTTATATGCATCCTACACTATTACAATATTCCATTCTCCTTTTATTAA 2916 0.1653 MSSIFAPGYSFNIPDFEVNEAVGGCMPETPEDSGAYGRIHEVFLSFRVRHQKGEFGKALEKLQERILSYVNEEFPQLVRGIGDKSEVMDSRLKVMFPNCRKALREAAGMSGVVVLNSRNERETIKNIVENVAHLLDKTELFVANNPVGVEPRVQAMSQLLLQKSSNDVLLLGMWGMGGIGKTTIAKAIYNKIGRNFEGRSFLANIREVWRQDVGQVNLQEQLLSDINKETKITIHNAESGKNILKKILCYKKVLLVLDDVNELDQLNALCGSYKWFGPGSRIIITTRDQDILRGRVDIVYTMKGMDEGESIELFSWHAFKQASPKENFTQLSRNVITYSGGLPLALEVLGCYLFDMKVAEWENVLEKLKRIPNHQVQKKLKISYDGLNDDTERDIFLDIACFFIGMDRNDVIHILNGCGLFAENGIRVLVERSLVTIDNKNKLRMHDLIRDMGREIVRANSLKVLEKRSRLWFHEDALDVLAKETGTEAIEGLALRLSINNATCLSTKAFKNMEKLRLLQLAGVRLDGDFKYLSKDLRWLCWHGFPLKYIPTNFYQRNLISIELQNSNVQLVWKEAQRMEKLKILNLSHSHSLTQTPDFSKLPSLEKLELIDCPKLSKISHTIGHLNRILRINLQDCISLHNLPRSIYKLKTLKTLILSGCSKIDKLEEDLEQMESLTILVADKTAIKRIPFSIVRSKSIGYISLCGYEGFSRDVFPSIIWSWMSPTNSLSSCIQTSVGKSSLVSLDVPNSSSHHLSYILENLPKLESLCIECDSKLQLTQEAKNIIDALYATNSEDLESTTTPLEMPDIDASTLIECNKHAHTSGSQKLLACHLIQMGTSCRVTYILRQSILQNKSTGDCNYVLPGDNYPEWLTFDNQGRPLLKCALNLVTVAMVNEVALAEEVAMMVIAMFNVKYAIKLATLLPIAIIVLIPIMMLQAIFSFRINSLNSNNFTSFICILHYYNIPFSFY 971
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01824 971 PANTHER RCT1-LIKE RESISTANCE PROTEIN, PUTATIVE-RELATED 42 880 - -
Cca01g01824 971 Gene3D Ribonuclease Inhibitor 641 790 IPR032675 -
Cca01g01824 971 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 135 399 IPR027417 -
Cca01g01824 971 SUPERFAMILY L domain-like 494 774 - -
Cca01g01824 971 Gene3D - 305 388 IPR042197 -
Cca01g01824 971 SUPERFAMILY "Winged helix" DNA-binding domain 375 481 IPR036390 -
Cca01g01824 971 Gene3D Ribonuclease Inhibitor 492 640 IPR032675 -
Cca01g01824 971 CDD AAA 147 292 - -
Cca01g01824 971 Pfam NB-ARC domain 152 384 IPR002182 GO:0043531
Cca01g01824 971 Gene3D - 113 299 IPR027417 -
Cca01g01824 971 PRINTS Disease resistance protein signature 339 353 - -
Cca01g01824 971 PRINTS Disease resistance protein signature 648 664 - -
Cca01g01824 971 PRINTS Disease resistance protein signature 170 185 - -
Cca01g01824 971 PRINTS Disease resistance protein signature 247 261 - -
Cca01g01824 971 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 42 880 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01824 Cca-Chr1 42452645 42469820 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01824 160 696 WRKY Transcription Factor Family AT5G45050 33.393 6.98e-76 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01824 - - ccaj:109804040 1632.46