Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01822 ATGTCTTCCATTTTTGCCCCCCGTTACTCTGTTCAAATTCCCATATTTGAGATCAATGAGGCCGGCGAAGGCGGGTTTACATTGCCTGAGCCTACGGAAAATAGTAGAGCAGCATATAGaagaatctatgaagtgttcttgagcttcagaggggaggactcacgtgcttctttcacttcacatctctatgcctctcttcagaatgcgggaatcaatgttttcaaggatgatgagtcacttccaaggggacatcgcatttcaaactcactgctgcgagcaattgagcagtctgaaatttgtgttgttgttttctcaacaaattatggagggtctcgatggtgtatggatgagttagagaaaataatggagtgtcacagaaccatagggctggttgttttgccagtgttctatgatgttgatccctctgaagtgcgccatcaaaaaggcgagtttggaaaagaattggaaaaacttgagaacAGGATTTTAAAAAGTGATGACAAATTCATATTTCAATGGGAGAAAGAGAATCTGCGGCTTAACAACCTTCGTCGGAGGGAGGCACTTCGTGAGGCTGCGGGCATATCAGGGGTAGTAGTCCTCAATTCCAGGAATGAAAATGAGTCTATCAAAAACATTGTTGAAAATGTGACACAATTGTTAGATAAGACAGAGTTGTTTGTTGCTGATAatccggtgggagtagaacctcgagtgcaagaaattgttcaattgctagaccaaaaaccatcaaatgatgttttactactggggatgtgggggatgggaggcatcggtaaaacaaccattgctaaagccatttacaataagattggccgcaattttgagggaaggagcttccttgcaaatatcagggaagtttggaggcaagacgctggccaagtcaatttacaagaacaacttctgtttgatatcaacaaagaaacaaaaacaaggatacgtaatgttgaatcaggaaaaaatatattaaaaaaaatactttcctataaaaaggtacttcttgtattggatgatgtgaatgaattggaccaactgaatgctttatgtggaagtgacaaatggtttgctccaggtagtagaataatcatcaccactagagatcaagatatacttagagggagagttgacatactatatacaatgaaaggcatggatgaaggtgaatctattgagctttttagttggcacgcattcaagcaagcaagtcctagagaaaattttacccaactttctagaaatgtaattatgtattccgggggattgccactagcccttgaagtacttgggtgttatttgtttgatatgaaggtagcagagtgggagaatgtattggagaaactcaagagaattcctaatcatcaaatacaaaagaagttaaaaataagctatgatggtttaaatgatgatactgaaagagatatatttctcgatatagcttgtttctttattggcatggaccggaatgatgttgtacatatattaaatggttgtggactttttgcagaaaatggaatacgtgtccttgtagagcgaagccttgtaataattgataataaaaacaagcttcaaatgcatgatttgataagggacatgggaagggaaatcattcgtgcaaattccctaaaggttcttgagaagcgtagcaggttatggtttcatgaggatgcacttgatgtattatcaaaagaaacgggaacaaaagctattgagggactggctctgaggttatcaacaaataatgcaacatgtttgagcactaaagcttttaaaaagatagtgaaacttaggttgcttcaacttgctggtgtacgactggatggagatttcaaatatctttccaaagatcttagatggctttgttggcatggatttcctttaaaatacataccaacaaacttttatcaaAGAAATCTTATTTCAATCGAGTTACAAAACAGTAATGTTCAACTTGTGTGGAAAGAAGCTCAGcggatggagaaacttaaaattctcaatcttagtcattctcattctttaacacagactccagacttttcaaaattgcctagtcttgaaaagttagaactcatagattgtccaaaattgtctaagatttctcataccattggacatctcaatcgaattcttcgaataaatttgcaagattgtattagtcttcataaccttccaaggagtatttataaattgaaaacccttaaaacactcattctttcaggatgttcaaagattgacaagttggaagaagacttggaacaaatggagtctttgacaatccttgttgcggataagactgcaataaaaagaatgcctttttcaattgtaaggtcaaaaaGCATTGGGTATATTTCTTTGTGTGGTTATGAAGGATTCTCACGTGATGTGTTTCCTTCTATCATTTGGTCTTGGATGTCACCAACCAATAGTCTCTCATCCTGCATTCAAACATCTGTAGGAATGTCATCTCTTGTTTCTTTAGATGTGACAAATAGCAGTTCTCATCATCTATCATATATTTTAGAGGACCTTCCAAAGCTTGAAAGTCTTTGCATAGAGTGTGACTCAAAACTTCAACTAACTCGAGAAGCAAAAAATATTATAGATGCCTTATATGCCACAAATTCTGAGGATTTAGAATCAACTACAACTACCTCAGAAATGTCAAATATTGATGCTTCTACATTAATCAAATGCAACAAACATGCGCACACTTCAGGGTCACAAAAATTGGTGGGATGTCATTTAATTCAGATGGGAATAAGTTGCCAAGTCACCGATATTCTGAGACAAAGCATTTTGCAGAATAAAAATACCAGTGATTGCAGTTATGTGCTTCCCGATGATAATTATCCAGAATGGTTAACTTTTGACTGTCAAGGTTCTTCCGTGATTTTTAAAGTCCCTCAAGTAAATGGGCGTAACTTGAAGACAATGATATGTCATGTTCATTATTCTTCACCAAACGATATGAAATCAACGGGCTTGAAAAACTTACTGTTGATAAATCACACAAAGACCACCATTCAAGTTTACAAGAGAGATGCATTACTCTTCTGTGACAATGAGAAGTGGCAAAAAGTGCTATCAAATATAGATCCTGGAAACGAAGTGGAAATTGTTGTTGTGTATGAGAGAAAATTAATTGTGAAAAAGTCAACAGTTTATCTCATATACGAAGCAATAACTGAATATTAA 3213 0.1444 MSSIFAPRYSVQIPIFEINEAGEGGFTLPEPTENSRAAYRRIYEVFLSFRGEDSRASFTSHLYASLQNAGINVFKDDESLPRGHRISNSLLRAIEQSEICVVVFSTNYGGSRWCMDELEKIMECHRTIGLVVLPVFYDVDPSEVRHQKGEFGKELEKLENRILKSDDKFIFQWEKENLRLNNLRRREALREAAGISGVVVLNSRNENESIKNIVENVTQLLDKTELFVADNPVGVEPRVQEIVQLLDQKPSNDVLLLGMWGMGGIGKTTIAKAIYNKIGRNFEGRSFLANIREVWRQDAGQVNLQEQLLFDINKETKTRIRNVESGKNILKKILSYKKVLLVLDDVNELDQLNALCGSDKWFAPGSRIIITTRDQDILRGRVDILYTMKGMDEGESIELFSWHAFKQASPRENFTQLSRNVIMYSGGLPLALEVLGCYLFDMKVAEWENVLEKLKRIPNHQIQKKLKISYDGLNDDTERDIFLDIACFFIGMDRNDVVHILNGCGLFAENGIRVLVERSLVIIDNKNKLQMHDLIRDMGREIIRANSLKVLEKRSRLWFHEDALDVLSKETGTKAIEGLALRLSTNNATCLSTKAFKKIVKLRLLQLAGVRLDGDFKYLSKDLRWLCWHGFPLKYIPTNFYQRNLISIELQNSNVQLVWKEAQRMEKLKILNLSHSHSLTQTPDFSKLPSLEKLELIDCPKLSKISHTIGHLNRILRINLQDCISLHNLPRSIYKLKTLKTLILSGCSKIDKLEEDLEQMESLTILVADKTAIKRMPFSIVRSKSIGYISLCGYEGFSRDVFPSIIWSWMSPTNSLSSCIQTSVGMSSLVSLDVTNSSSHHLSYILEDLPKLESLCIECDSKLQLTREAKNIIDALYATNSEDLESTTTTSEMSNIDASTLIKCNKHAHTSGSQKLVGCHLIQMGISCQVTDILRQSILQNKNTSDCSYVLPDDNYPEWLTFDCQGSSVIFKVPQVNGRNLKTMICHVHYSSPNDMKSTGLKNLLLINHTKTTIQVYKRDALLFCDNEKWQKVLSNIDPGNEVEIVVVYERKLIVKKSTVYLIYEAITEY 1070
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01822 1070 Gene3D - 41 219 IPR035897 -
Cca01g01822 1070 Gene3D Ribonuclease Inhibitor 550 728 IPR032675 -
Cca01g01822 1070 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 49 1060 IPR044974 GO:0006952
Cca01g01822 1070 SMART till_3 42 195 IPR000157 GO:0007165
Cca01g01822 1070 Pfam NB-ARC domain 237 470 IPR002182 GO:0043531
Cca01g01822 1070 PANTHER RCT1-LIKE RESISTANCE PROTEIN, PUTATIVE-RELATED 49 1060 - -
Cca01g01822 1070 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 219 485 IPR027417 -
Cca01g01822 1070 Gene3D - 391 474 IPR042197 -
Cca01g01822 1070 SUPERFAMILY L domain-like 581 858 - -
Cca01g01822 1070 Pfam TIR domain 43 217 IPR000157 GO:0007165
Cca01g01822 1070 ProSiteProfiles TIR domain profile. 41 221 IPR000157 GO:0007165
Cca01g01822 1070 SUPERFAMILY "Winged helix" DNA-binding domain 461 567 IPR036390 -
Cca01g01822 1070 Gene3D Ribonuclease Inhibitor 729 877 IPR032675 -
Cca01g01822 1070 Gene3D - 220 383 IPR027417 -
Cca01g01822 1070 PRINTS Disease resistance protein signature 256 271 - -
Cca01g01822 1070 PRINTS Disease resistance protein signature 425 439 - -
Cca01g01822 1070 PRINTS Disease resistance protein signature 333 347 - -
Cca01g01822 1070 PRINTS Disease resistance protein signature 734 750 - -
Cca01g01822 1070 SUPERFAMILY Toll/Interleukin receptor TIR domain 35 168 IPR035897 -
Cca01g01822 1070 CDD AAA 233 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01822 Cca-Chr1 42424256 42431619 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01822 36 780 WRKY Transcription Factor Family AT4G12020 30.809 4.17e-79 283
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01822 - - ccaj:109804040 1796.94