Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01819 atggagtgtcacagaaccacagggctggttgttttgccagtgttctatgatgttgatccctctgaagtgcgccatcaaaaaggcgagtttggaaaagaattggaaaaacttgagaacaggattttaaaaggtgtagaagaagttgaagaaCAGTTCAATATATGGGAAAAAGAGCATCTGCGGTTTAATAAACTACGTTGGATGCGTTGGAGGGAGGCACTTCGTGAGGCTGCTGGCATATCAGGAGTTGTAGTCCTCGATTCCAGGAATGAAAGTGAGTCTATCAAAAACATTGTTGAAAATGTCACACATTTGTTAGACAAGACAGAGTTGTTTgttgccaataatccagtgggagtagaacctcgagtgcaagaaattattcatttggtagaccaaaaaccatcaaatgatgttttactactagggatgtgggggatgggaggcattggtaaaacaaccattgctaaagccatttacaataagattggccggaattttgagggaaggagcttccttgcaaatatcagggaagtttggaggcaagacactggcaaagtcaatttacaagaacaacttctgtttgatatcaacaaagaaacaaaaacaaggatacgtaatgttgaatcaggaaaaaatatattaaaagaaagactttactataaaaaggtacttcttgtattggatgatgtgaatgaattggaccaactaaatgctttatgtggaagtgacaaatggtttggtccaggtagtagaataatcatcaccactagagatcaagatgtacttagagggagagctgacatattatatacaatgaaaggcatggatgaaggtgaatccattgagctttttagttggcacgcattcaagcaagcaagtcctagagaaaattttacccaactttctagaaatgtaattacgtattccgggggattaccactagcccttgaagttcttgggtgttatttgtttgatatgaaggtagtagagtgggagattgtattgaagaaactcaagagaattcctaatcatcaagtacaaaagaagttacaaataagctatgatggtttaaatgatgataccgagagaaatatattcctcgatatagcttgtttctttgttggcatggaccggaatgaagttatacaaatattaaatgattgtggacttttcgcagaaaatggaatacgtgtccttgtagagcgaagccttataacaattgataataaaaacaagcttcaaatgcatgatttgttacgggacatgggaagggaaattattcgtgcaaattcaccaaaggttcttgagaagcgtagcaggttatggtttcatgaggatgcgcttgatgtattatcaaaacaaacgggaacaaaagctattgagggattggctttgaggttatcaacaaataatgcaacatgtttgagcactaaagcttttaaaaagatggagaaacttaagttgcttcaacttgctggtgtacgacttgatggagatttcaaatatctttccaaagatcttaggtggctttgttggcatggatttcctttaaaatatataccaacaaacttctatcaaagaaatcttatttCAATTGAGTTACAAAATAGTAATGTTCAACTTGTGTGGAAAGAAGCTCAGcggatggagaaacttaaaattctcaatctcagtcattcccattacttagctcagactccagacttttcaaaattgcctagtctcgaaaagttagaactcatagattgtccaaaattgtctaagatttctcataccattggacatctcaatcaaattcttcaaataaatttgcaagattgtattagtcttcgcaaccttccaaggagtatttataaattgaaaacccttaaaacactcattctttcaggatgttcaaagattgacaagttggaagaagacttggaacaaatggagtctttgacaatccttgttgcggataagactgcaataaaaagaatgcctttttcaattgtaaggtcaaaaaGCATTGGGTATATTTCTTTGTGTGGTTATGAAGGATTCTCACGTGATGTGTTTCCTTCTATCATTTGGTCTTGGATGTCACCAACCAATAGTCTCTCATCCTGCATTCAAACATCTGGAGGAATGTCATCTCTTGTTTCTTTAGATGTGCCAAATATCAATTCTCATCATCTATCATATATTTTAGAGGACCTTCCAAAGCTTGAAAGTCTTTGCATAGAGTGTGACTCAAAACTTCAACTAACTCGAGAAACAAAAAATATTATAGATGCCTTATATGCCACAAATTTTGAAGATTTAGAATCAACTACAACTACCTCAAAAATGTCAAATATTGATGCTTCTACATTAATTGAATGCAATAAACATGCGCACACTTCAGGGTCACAAAAATTGTTGGGATGCCATTTAATTCAAATGGGAATAAGTTGCCGAGCCACCTATATTCTGAGACAAAGCATTTTACAGAATAAAAGTACTAGTGATTGCAGTTCTGTGCTCCCTGATGATAATTATCCAGAATGGTTAACTTTTGACAGCCAAGGTTCTTCTGTGATTTGTAAAGTCCCTCAAGTAAATGGACGTAACTTGAAGACAATGATATGTCATGTTCATTATTCTTCACCAAACAATATTAAATCAACAAGCCTGAAAAACTTACTGGTGATAAATCACACAAAGACCACCATTCAAGTTTACAAGAGAGATGCATTACTCTTCTGTGACAATGAGAAGTGGCAAAAGGTACTATCAAATATAGATCCTGGGAATGAAGTGGAAATTGTTGTTGTGTATGAGAGAAAATTAATTGTAAAAAAGACAACAGTTTATCTCATATACGAAGCAATAGCTAAAGAAATGGAGCACTACCAAACATCAAATAAGAATGAAATTGTTTCTAGTGATGATGAAAATGTATGTGTTGCTAGGTCGACCTCTCCTGAAGTGTGCACTCAATTTGGTCATGGTGGTGGCCATGGTAGACGAGCTAGGTTGCTTTGGCCAAAGAGGTGGCCATGGTGGTCATAA 3036 0.1538 MECHRTTGLVVLPVFYDVDPSEVRHQKGEFGKELEKLENRILKGVEEVEEQFNIWEKEHLRFNKLRWMRWREALREAAGISGVVVLDSRNESESIKNIVENVTHLLDKTELFVANNPVGVEPRVQEIIHLVDQKPSNDVLLLGMWGMGGIGKTTIAKAIYNKIGRNFEGRSFLANIREVWRQDTGKVNLQEQLLFDINKETKTRIRNVESGKNILKERLYYKKVLLVLDDVNELDQLNALCGSDKWFGPGSRIIITTRDQDVLRGRADILYTMKGMDEGESIELFSWHAFKQASPRENFTQLSRNVITYSGGLPLALEVLGCYLFDMKVVEWEIVLKKLKRIPNHQVQKKLQISYDGLNDDTERNIFLDIACFFVGMDRNEVIQILNDCGLFAENGIRVLVERSLITIDNKNKLQMHDLLRDMGREIIRANSPKVLEKRSRLWFHEDALDVLSKQTGTKAIEGLALRLSTNNATCLSTKAFKKMEKLKLLQLAGVRLDGDFKYLSKDLRWLCWHGFPLKYIPTNFYQRNLISIELQNSNVQLVWKEAQRMEKLKILNLSHSHYLAQTPDFSKLPSLEKLELIDCPKLSKISHTIGHLNQILQINLQDCISLRNLPRSIYKLKTLKTLILSGCSKIDKLEEDLEQMESLTILVADKTAIKRMPFSIVRSKSIGYISLCGYEGFSRDVFPSIIWSWMSPTNSLSSCIQTSGGMSSLVSLDVPNINSHHLSYILEDLPKLESLCIECDSKLQLTRETKNIIDALYATNFEDLESTTTTSKMSNIDASTLIECNKHAHTSGSQKLLGCHLIQMGISCRATYILRQSILQNKSTSDCSSVLPDDNYPEWLTFDSQGSSVICKVPQVNGRNLKTMICHVHYSSPNNIKSTSLKNLLVINHTKTTIQVYKRDALLFCDNEKWQKVLSNIDPGNEVEIVVVYERKLIVKKTTVYLIYEAIAKEMEHYQTSNKNEIVSSDDENVCVARSTSPEVCTQFGHGGGHGRRARLLWPKRWPWWS 1011
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01819 1011 ProSiteProfiles TIR domain profile. 1 106 IPR000157 GO:0007165
Cca01g01819 1011 SMART AAA_5 138 277 IPR003593 -
Cca01g01819 1011 SUPERFAMILY Toll/Interleukin receptor TIR domain 1 82 IPR035897 -
Cca01g01819 1011 Gene3D - 1 102 IPR035897 -
Cca01g01819 1011 PRINTS Disease resistance protein signature 619 635 - -
Cca01g01819 1011 PRINTS Disease resistance protein signature 310 324 - -
Cca01g01819 1011 PRINTS Disease resistance protein signature 218 232 - -
Cca01g01819 1011 PRINTS Disease resistance protein signature 141 156 - -
Cca01g01819 1011 PANTHER RCT1-LIKE RESISTANCE PROTEIN, PUTATIVE-RELATED 4 949 - -
Cca01g01819 1011 SUPERFAMILY "Winged helix" DNA-binding domain 346 452 IPR036390 -
Cca01g01819 1011 Pfam TIR domain 1 102 IPR000157 GO:0007165
Cca01g01819 1011 Gene3D Ribonuclease Inhibitor 441 610 IPR032675 -
Cca01g01819 1011 Gene3D - 276 359 IPR042197 -
Cca01g01819 1011 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 4 949 IPR044974 GO:0006952
Cca01g01819 1011 Gene3D - 103 268 IPR027417 -
Cca01g01819 1011 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 104 370 IPR027417 -
Cca01g01819 1011 CDD AAA 118 261 - -
Cca01g01819 1011 Pfam NB-ARC domain 123 355 IPR002182 GO:0043531
Cca01g01819 1011 Gene3D Ribonuclease Inhibitor 611 761 IPR032675 -
Cca01g01819 1011 SUPERFAMILY L domain-like 466 743 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01819 Cca-Chr1 42400428 42407194 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01819 521 676 WRKY Transcription Factor Family AT5G45050 29.560 3.10e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01819 - - ccaj:109804040 1687.16