Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01813 ATGATAGTTGCTATGGACTTGAATGCCTCGCCAGTTCCCGAGGAAGATGAAGATATCTTTGAGGAGAAAATACATGTTGAAGAGTATCATGCCCCTGAAGATCGCCCAGAAAGTGGAGCTGATATACAACGCCGGGAGCGTGAAGAAAGAAAGAGACGATTGAAGAGAGAAAGACCAGATGACAGACCTGTACATGCGTCACAGTCACCTGGATATGATCAGCTATTTCACAATAAGAACCCTAAATCATATGATAAAAGCAGGCTTCCTCCGGGGTGGTTGGATTGCCCTTCATTTGGCCAGGAAATTTGTTTCATGATACCTTCTAAGGTTCCACTTGGTGAATCGTTCAATGACTGCATTATTCCTGGTAAAAGATACTCATTTAAACAAGTGATACATCAACAAAGAGTTTTAGGGAGAAAACTTGGTCTGGTGATTGATTTGACAAATACCTCTCGATACTATCCTGTCTCGGATTTAAAAAAAGAGTGCATCAAGCATGTTAAGATTCAATGCAGGGGGCGCGATTCTGTACCTGATAATTTATCTGTGAACCAGTTTGTCTATGAGGTTACACAATTTTTGTCACGTCAAAAGCACACGAAGAAGCATATACTTGTTCATTGCACACATGGGCATAATCGTACAGGATACATGATCATTCACTATCTAATGCGTGCTATGCCAATGTCTGTTACTCAGGCGATAAAAATATTTTCTGAAGCTCGGCCTCCAGGAATCTACAAACCTGATTATATTGATGCTTTGTACACATTTTATCATGAGAAAAAGCCTGAAATGGTAGTTTGTCCTCCTACTCCGGAGTGGAAGAGATCTTCTGAATTTGATCTCAATGGTGAAGCTGTTCCAGATGATGATGATGATGGAGTACCAGGCCCTGATTTGCAGGAGAACCACGAGACAGACTCACGAATGACAAATGATGATGTTTTGGGAGATGAGATACCTGCTGATCAGCAAGATGCATTGCGTCAGTTCTGTTATCAAACTCTTAAATTGGGTGTTGGGCCCAGGGGACACACACAATTTCCAGGTTCGCACCCAGTTTCTCTCAACAGGGATAATTTACAATTGTTACGGCAGCGCTATTATTATGCAACATGGAAAGCAGATGGTACACGATATATGATGCTAATAACAATGGATGGATGTTACCTGATTGATAGAAGTTTTAATTTTCGAAGGGTGCAAATGAGGTTTCCTTGCAGGAGTACAAATGATGGTTTGGGCGAGAAGACTCACCACTTCACATTACTTGATGGTGAGATGGTTATTGATACGTTGCCAGATTCACAGAAGCAGGAGAGAAGATACCTTATATATGATATGATGGCAATCAACCAAGTATCAATAATAGAGCGACCCTTCTATGAACGATGGAAGATGCTTGAGAAAGAGGTGATTGAACCTAGGAATCATGAGCGGCAACACATATATCAGAGCAGAAATCCTTACTATAGATATGATCTGGAACCATTCAGGGTGAGGAGGAAGGATTTTTGGTTGCTCTCTACTGTCACAAAGCTTTTAAAGGAATTCATCAAAAGACTCTCACACGAGGCAGATGGTCTCATATTTCAGGGTTGGGATGATCCTTATATACCACGTACTCACGAAGGACTCTTGAAGTGGAAATATGCTAATCTGAATTCAGTTGATTTTCTTTTCGAGGTAGTATCATCATTCATCAGTCATCACTATATTTCACATGGATATGGTGTTGGGATTTGGGATATTACTTTGATGTCCCTTGGTAAGTTATAG 1788 0.4077 MIVAMDLNASPVPEEDEDIFEEKIHVEEYHAPEDRPESGADIQRREREERKRRLKRERPDDRPVHASQSPGYDQLFHNKNPKSYDKSRLPPGWLDCPSFGQEICFMIPSKVPLGESFNDCIIPGKRYSFKQVIHQQRVLGRKLGLVIDLTNTSRYYPVSDLKKECIKHVKIQCRGRDSVPDNLSVNQFVYEVTQFLSRQKHTKKHILVHCTHGHNRTGYMIIHYLMRAMPMSVTQAIKIFSEARPPGIYKPDYIDALYTFYHEKKPEMVVCPPTPEWKRSSEFDLNGEAVPDDDDDGVPGPDLQENHETDSRMTNDDVLGDEIPADQQDALRQFCYQTLKLGVGPRGHTQFPGSHPVSLNRDNLQLLRQRYYYATWKADGTRYMMLITMDGCYLIDRSFNFRRVQMRFPCRSTNDGLGEKTHHFTLLDGEMVIDTLPDSQKQERRYLIYDMMAINQVSIIERPFYERWKMLEKEVIEPRNHERQHIYQSRNPYYRYDLEPFRVRRKDFWLLSTVTKLLKEFIKRLSHEADGLIFQGWDDPYIPRTHEGLLKWKYANLNSVDFLFEVVSSFISHHYISHGYGVGIWDITLMSLGKL 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01813 595 PIRSF mRNA_capping_HCE 75 574 IPR017074 GO:0004484|GO:0006370|GO:0140818
Cca01g01813 595 Gene3D Protein tyrosine phosphatase superfamily 64 284 IPR029021 -
Cca01g01813 595 ProSiteProfiles Dual specificity protein phosphatase domain profile. 118 267 IPR020422 GO:0006470|GO:0008138
Cca01g01813 595 Pfam mRNA capping enzyme, catalytic domain 355 553 IPR001339 GO:0004484|GO:0005524|GO:0006370
Cca01g01813 595 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 186 255 IPR000387 GO:0016311|GO:0016791
Cca01g01813 595 CDD RNA_5'-triphosphatase 92 258 - -
Cca01g01813 595 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 89 278 IPR029021 -
Cca01g01813 595 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 317 554 - -
Cca01g01813 595 ProSiteProfiles ATP-dependent DNA ligase family profile. 437 594 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Cca01g01813 595 CDD Adenylation_mRNA_capping 326 554 IPR001339 GO:0004484|GO:0005524|GO:0006370
Cca01g01813 595 PANTHER MRNA (GUANINE-N(7)-)-METHYLTRANSFERASE-RELATED 3 568 - -
Cca01g01813 595 Gene3D DNA ligase/mRNA capping enzyme 314 553 - -
Cca01g01813 595 MobiDBLite consensus disorder prediction 1 84 - -
Cca01g01813 595 MobiDBLite consensus disorder prediction 285 320 - -
Cca01g01813 595 Pfam Dual specificity phosphatase, catalytic domain 141 261 IPR000340 GO:0008138|GO:0016311
Cca01g01813 595 MobiDBLite consensus disorder prediction 300 319 - -
Cca01g01813 595 ProSitePatterns Tyrosine specific protein phosphatases active site. 208 218 IPR016130 GO:0016311|GO:0016791
Cca01g01813 595 MobiDBLite consensus disorder prediction 23 64 - -
Cca01g01813 595 PANTHER MRNA-CAPPING ENZYME 3 568 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01813 Cca-Chr1 42283843 42302515 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01813 1 565 Protein tyrosine phosphatase (PTP) family AT3G09100 69.474 0.0 800
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01813 K13917 - gmx:100776633 1093.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g01813 01 42283843 42302515 Cca01g01813 01 42283843 42302515 ECH