Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01776 ATGGAGCCGGAGGAAACcgccgtcgccgtcgcggacgacgggagcggcgacgaggggttgctcggactcggcggcggcggaagcagcagcggcggcggcAGGGACAGAGTGAAGGGACCTTGGTCGCCGGAAGAGGACGCCATTCTGAGTCGTCTTGTGAGCAAGTTCGGCGCCAGAAATTGGAGCCTCATCGCGCGCGGGATCAGCGGAAGATCCGGCAAGTCCTGCCGCCTCCGGTGGTGCAACCAGCTCGACCCCGCCGTTAAGCGCAAGCCCTTCACCGATGAGGAGGACCGAATCATAGTTGCTGCACATGCAATCCATGGGAACAAATGGGCAGCCATTGCCAGGCTTCTACCAGGAAGAACGGATAATGCCATTAAAAACCACTGGAATTCAACTTTGAGGCGTCGGGGAGTTGAACTTGATAAGATTAAATTAGAATCTGGTAACTTCATGGAAGATGTGAGCTTGGACAAAGCCAAAGCATCGTCAGAAGACACACTATCATGTGGGGATGTTAATTCTTTTAAATCCTCAGAAGGAAGAGATGTCAGTTCTGTGGAGATCATGGATGATAAAAATGAAGACAAAGCACAAACTGAGGGTCAATTACACCATGAAGCCAGGGACCCGCCTACCCTTTTTCGGCCAGTAGCACGCGTGAGTGCCTTTAGTGCGTATCACTCATTTGATGGCATACAGCCTTCAGCATCAATTCAAAGACCTGTTCCGATGCAAGGACCCATTTTACAATCAACAAAACCAGATATGGAATTTTGTAAAATGCTTGAAGGAATTTGTGGTGACCAGTCAGTGCCTCACCAGTGTGGACATGGTTGCTGTGCAGCTCAAAATGGTAAAAAGTCCAAAAGCTCTTTGTTGGGACCAGAATTCATTGAATTTTCGGAACCCCCATCTTTCCCAAATTTTGAGTTGGCTGCAATAGCTACAGACATTAGTAACCTTGCTTGGCTTAAAAGTGGATTGGAGAATAGCAGTGTTAAAATGATGGGCAGCACCTCTGGCAGGGTAATATCTAATGGATCTCAAGTACATATTGGCCATTAG 1071 0.4351 MEPEETAVAVADDGSGDEGLLGLGGGGSSSGGGRDRVKGPWSPEEDAILSRLVSKFGARNWSLIARGISGRSGKSCRLRWCNQLDPAVKRKPFTDEEDRIIVAAHAIHGNKWAAIARLLPGRTDNAIKNHWNSTLRRRGVELDKIKLESGNFMEDVSLDKAKASSEDTLSCGDVNSFKSSEGRDVSSVEIMDDKNEDKAQTEGQLHHEARDPPTLFRPVARVSAFSAYHSFDGIQPSASIQRPVPMQGPILQSTKPDMEFCKMLEGICGDQSVPHQCGHGCCAAQNGKKSKSSLLGPEFIEFSEPPSFPNFELAAIATDISNLAWLKSGLENSSVKMMGSTSGRVISNGSQVHIGH 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01776 356 MobiDBLite consensus disorder prediction 1 40 - -
Cca01g01776 356 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 85 139 IPR017930 -
Cca01g01776 356 CDD SANT 92 135 IPR001005 -
Cca01g01776 356 PANTHER MYB PROTEIN-RELATED 8 333 - -
Cca01g01776 356 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 33 84 IPR017930 -
Cca01g01776 356 ProSiteProfiles Myb-like domain profile. 33 84 IPR001005 -
Cca01g01776 356 MobiDBLite consensus disorder prediction 167 186 - -
Cca01g01776 356 Pfam Myb-like DNA-binding domain 41 98 - -
Cca01g01776 356 MobiDBLite consensus disorder prediction 168 183 - -
Cca01g01776 356 CDD SANT 40 82 IPR001005 -
Cca01g01776 356 PANTHER - 8 333 - -
Cca01g01776 356 Gene3D - 37 89 - -
Cca01g01776 356 SUPERFAMILY Homeodomain-like 35 131 IPR009057 -
Cca01g01776 356 ProSiteProfiles Myb-like domain profile. 85 135 IPR001005 -
Cca01g01776 356 SMART sant 89 137 IPR001005 -
Cca01g01776 356 SMART sant 37 86 IPR001005 -
Cca01g01776 356 Gene3D - 92 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01776 Cca-Chr1 41594043 41601311 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01776 27 356 MYB Transcription Factor Family AT3G09230 51.471 1.67e-110 326
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca01g01776 Myb_DNA-bind_6 1.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01776 K09422 - gmx:100811740 607.446
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01555 05 34729946 34734481 Cca01g01776 01 41594043 41601311 ECH
Cca01g01776 01 41594043 41601311 Cca01g01776 01 41594043 41601311 ECH