Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01775 ATGTCAAGTCTGCAGATGTCTCATGTGGATTTCGAGCAAGGTGGTCACCACCACCGTTCTGTGAGTGGCAGTGAGATGAGCATGTGCTTTTCTGATGCCGAGAATGGTTCCTGCTATTCCCATTTTTATTCAACAAATGGTGACCCTTATGATGATTACAGTTTTGCTTGTGTTTCTGATGCTGAGGGTGGGGGTGATGCTGATTCCAGGAGGGGTTCTTCTGTCACTGATTGTTCAGTGGAGGTGGAAATTGAAAGTGGGTTTCCTGAAATTAAGGTGCATTTGGCCAAAGTGGAGAGGGATTGCAGGATTTGTCATCTTGGCTTGGAGAGTGATAGTCAAGAGTCTGGAGTTCCCATTGAATTGGGGTGTTCTTGCAAGGATGATTTAGGTGCTGCTCACAAGAATTGTGCTGAGGCCTGGTTCAAGATTAAGGGGAATAGGACATGTGAAATATGTCACTCTGTGGCACGGAACGTATGTGGAGCAATTGAGGAGACAACACAAACAATGAGTGACAGCAACAATGCTGCTGCAGCATCCACAGTCTCAACATCACCTCCTCCAGCAGAAACTCGAAGATTTTGGCACGGCCATCGCTTCCTGAATTTTCTGCTTGCTTGTATAGTTTTTGCATTTGTCATATCGTGGCTTTTTCACTTCAACATGCCCTCATCATAA 681 0.4552 MSSLQMSHVDFEQGGHHHRSVSGSEMSMCFSDAENGSCYSHFYSTNGDPYDDYSFACVSDAEGGGDADSRRGSSVTDCSVEVEIESGFPEIKVHLAKVERDCRICHLGLESDSQESGVPIELGCSCKDDLGAAHKNCAEAWFKIKGNRTCEICHSVARNVCGAIEETTQTMSDSNNAAAASTVSTSPPPAETRRFWHGHRFLNFLLACIVFAFVISWLFHFNMPSS 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01775 226 CDD RING_CH-C4HC3_MARCH 102 154 - -
Cca01g01775 226 SMART ringv_2 101 154 IPR011016 GO:0008270
Cca01g01775 226 PANTHER OS01G0850200 PROTEIN 5 225 - -
Cca01g01775 226 SUPERFAMILY RING/U-box 99 157 - -
Cca01g01775 226 PANTHER ZINC FINGER, RING-CH-TYPE 5 225 - -
Cca01g01775 226 ProSiteProfiles Zinc finger RING-CH-type profile. 94 160 IPR011016 GO:0008270
Cca01g01775 226 Pfam RING-variant domain 102 153 IPR011016 GO:0008270
Cca01g01775 226 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 91 162 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01775 Cca-Chr1 41554180 41558248 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01775 68 226 C3H Transcription Factor Family AT5G05830 58.750 5.87e-68 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01775 - - gmx:100813946 386.341
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01553 05 34722311 34726517 Cca01g01775 01 41554180 41558248 ECH
Cca07g01494 07 38961698 38965281 Cca01g01775 01 41554180 41558248 ECH
Cca01g01775 01 41554180 41558248 Cca05g01553 05 34722311 34726517 ECH
Cca01g01775 01 41554180 41558248 Cca01g01775 01 41554180 41558248 ECH