Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cca01g01775 | ATGTCAAGTCTGCAGATGTCTCATGTGGATTTCGAGCAAGGTGGTCACCACCACCGTTCTGTGAGTGGCAGTGAGATGAGCATGTGCTTTTCTGATGCCGAGAATGGTTCCTGCTATTCCCATTTTTATTCAACAAATGGTGACCCTTATGATGATTACAGTTTTGCTTGTGTTTCTGATGCTGAGGGTGGGGGTGATGCTGATTCCAGGAGGGGTTCTTCTGTCACTGATTGTTCAGTGGAGGTGGAAATTGAAAGTGGGTTTCCTGAAATTAAGGTGCATTTGGCCAAAGTGGAGAGGGATTGCAGGATTTGTCATCTTGGCTTGGAGAGTGATAGTCAAGAGTCTGGAGTTCCCATTGAATTGGGGTGTTCTTGCAAGGATGATTTAGGTGCTGCTCACAAGAATTGTGCTGAGGCCTGGTTCAAGATTAAGGGGAATAGGACATGTGAAATATGTCACTCTGTGGCACGGAACGTATGTGGAGCAATTGAGGAGACAACACAAACAATGAGTGACAGCAACAATGCTGCTGCAGCATCCACAGTCTCAACATCACCTCCTCCAGCAGAAACTCGAAGATTTTGGCACGGCCATCGCTTCCTGAATTTTCTGCTTGCTTGTATAGTTTTTGCATTTGTCATATCGTGGCTTTTTCACTTCAACATGCCCTCATCATAA | 681 | 0.4552 | MSSLQMSHVDFEQGGHHHRSVSGSEMSMCFSDAENGSCYSHFYSTNGDPYDDYSFACVSDAEGGGDADSRRGSSVTDCSVEVEIESGFPEIKVHLAKVERDCRICHLGLESDSQESGVPIELGCSCKDDLGAAHKNCAEAWFKIKGNRTCEICHSVARNVCGAIEETTQTMSDSNNAAAASTVSTSPPPAETRRFWHGHRFLNFLLACIVFAFVISWLFHFNMPSS | 226 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cca01g01775 | 226 | CDD | RING_CH-C4HC3_MARCH | 102 | 154 | - | - | |
Cca01g01775 | 226 | SMART | ringv_2 | 101 | 154 | IPR011016 | GO:0008270 | |
Cca01g01775 | 226 | PANTHER | OS01G0850200 PROTEIN | 5 | 225 | - | - | |
Cca01g01775 | 226 | SUPERFAMILY | RING/U-box | 99 | 157 | - | - | |
Cca01g01775 | 226 | PANTHER | ZINC FINGER, RING-CH-TYPE | 5 | 225 | - | - | |
Cca01g01775 | 226 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 94 | 160 | IPR011016 | GO:0008270 | |
Cca01g01775 | 226 | Pfam | RING-variant domain | 102 | 153 | IPR011016 | GO:0008270 | |
Cca01g01775 | 226 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 91 | 162 | IPR013083 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Cca01g01775 | Cca-Chr1 | 41554180 | 41558248 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Cca01g01775 | 68 | 226 | C3H Transcription Factor Family | AT5G05830 | 58.750 | 5.87e-68 | 206 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cca01g01775 | - | - | gmx:100813946 | 386.341 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Cca05g01553 | 05 | 34722311 | 34726517 | Cca01g01775 | 01 | 41554180 | 41558248 | ECH | |
Cca07g01494 | 07 | 38961698 | 38965281 | Cca01g01775 | 01 | 41554180 | 41558248 | ECH | |
Cca01g01775 | 01 | 41554180 | 41558248 | Cca05g01553 | 05 | 34722311 | 34726517 | ECH | |
Cca01g01775 | 01 | 41554180 | 41558248 | Cca01g01775 | 01 | 41554180 | 41558248 | ECH |