Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01754 ATGGATATGCATCCAGGTGATGACATGCTAATGTCCCGTGGGAAAGATAACAGCATGAAGATGCACATGAGTCTCTATTGGGGCAAAGATGCCATAGTACTCTTCTCTGGGTGGCCTAAGCACAGTGTTGGCCACTACATCTTAGCCATATTGTTGGTGTTTTTCCTTGCAATGATTGCTGAGGTTATCTCCAACAAGCCCAACATCAAGCGTGGGACTAATCCCATAATAGGAGGGTTCACTCAAGCAACCTTGTATGTCTTCCGCATAAGCTTCCTTTACTTGGTCATGCTTGCTGTCATGTCCTTCAACTTGGGAATCTTCATAGCTGCTGTCGCTGGCCATACCTTGGGCTTCTTTTTTGCTAAGTCTCGCGCTCTTGTTCTTGCCAATAGAGAACAAGGGTCCTCCATTGCTCAAAAAGTTTAA 429 0.4545 MDMHPGDDMLMSRGKDNSMKMHMSLYWGKDAIVLFSGWPKHSVGHYILAILLVFFLAMIAEVISNKPNIKRGTNPIIGGFTQATLYVFRISFLYLVMLAVMSFNLGIFIAAVAGHTLGFFFAKSRALVLANREQGSSIAQKV 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01754 142 Pfam Ctr copper transporter family 75 121 IPR007274 GO:0005375|GO:0016021|GO:0035434
Cca01g01754 142 PANTHER SOLUTE CARRIER FAMILY 31 COPPER TRANSPORTERS 1 137 IPR007274 GO:0005375|GO:0016021|GO:0035434
Cca01g01754 142 PANTHER CTR FAMILY COPPER TRANSPORTER 1 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01754 Cca-Chr1 41066790 41067411 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01754 25 137 Inorganic Solute Cotransporters AT3G46900 41.228 2.92e-26 95.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01754 K14686 - gmx:100808693 247.284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g01754 01 41066790 41067411 Cca01g01754 01 41066790 41067411 ECH