Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01753 ATGGCTGCAAATGAGGATGCGGCACAGGATTTTGCACCAAAGAAAAAGCCACCTTCAGAGGATGAGAAGAGGAAGAAGAAAATCGTGCCTGGGAGTTTGATGAAAGCTTTGGTGAGGCCTGGTGGGGGTGATTCTGGACCTTCGGATGGTGACCAGGTTATCTATCACCGCACGATCCGAACATTGGATGGAGTACTTGTGGAATCTACCAGATATGATTGTGGAGGCAAGGGCACCCCGATAAGACATGTTTTGGGCAAAAGCAAGATGTTATTGGGCTTGCTAGAAGGGATTCCTACCATGTTGAAGGGTGAAGTGGCAATGTTCAAGATGAAGCCTCAGTTGCATTATGGTGAGGATGATTGTCCTGTTTCTGCTCCTGATGGTTTTCCTAAAGATGATGAACTTCATTTTGAAATTGAGCTGATAGAATTTTTCAAAGCCAAGGTTGTTACTGATGATTTGGGAGTTGTGAAAAAGGTAGTAAGTGAAGGGCAGGGGTGGGAATCTCCAAGAGAACCTTATGAAGTGAAGGCTTGGATTTCAGCGAAGACAGTTACTGGGAAATTGATCATGTCACATACAGAAGGAGAACCATACTTCTTTACATTTGGAAAATCAGAGGTACCTAAAGGTCTTGAAATGGCAATAGGAACAATGGTTCGGGAAGAGAAGGCTGTTATTTATGTTACCAGTCAGTATTTAACCGAATCTCCTTTGATGCGTGTAGCAGATGATTATGATGAAGTCCATTTTGAAGTGGAGCTTGTTCACTTTATTCAGGTGAGGGACATGCTTGGAGATGGACGCCTAATAAAACGCCGAATTCGTGATGGGAAAGGTGATTTTCCGATGGATTGTCCACTTCAAGACAGTCTACTTCGCGTTCATTATAAGGGCACTGTTCTTAATGAAGAAAAGATGGTATTTTATGATACGAGAGTAGACAATGATGGTCAACCATTGGAGTTCTGTTCTGGAGAAGGGCTTGTACCGGAAGGATTTGAAATGAGCGTTCGTCTGATGCTTCCTGGAGAGATAGCTCTAGTCACATGTCCACCTGACTATGCTTATGATAAGTTTCCAAGGCCTTTAAATGTCCCCGAGGGTGCTAATATTCAATGGGAAATTGAGCTTCTTGGTTTTGAAACACCAAAGGACTGGACTGGATTGGACTTTAAAAGTATAATGAACGAAGCTGAAAATATCAGAAATACGGGTAACAGACTGTTCAAGGAAGGAAAATATGAACTTGCCAAGGCAAAGTATGAAAAGGTGCTTCGAGAATTTAATCATGTTAATCCACAAGATGACGAAGAAGGAAAAGTTTTTGCAGATACACGGAATTTGCTGCACCTGAATGTTGCTGCATGCCTTCTAAAGTTGGGAGAATGCAAAAAGTCCATTGAGAGTTGCAATAAGGTTTTGGATGCAAATCCTGCACATGTGAAGGGTCTTTATCGTCGTGGAATGGCTTACATGGCTGCTGGAGATTTTGAAGAAGCAAGGGCAGATTTCAAAATGATGATGAAAGTTGACAAATCAACAGAATCAGATGCAACTGCAGCTCTTCAAAAATTGAAACAGAAGGAGCAGGAAGTCGAGAAGAAAGCTAGGAAACAATTTAAAGGTCTATTTGACAAGAAGCCTGGAGAAATTGCAGAAGCTAAAGCTGATGTAGATGGAGATCAGATAACAAGAGAAACCCAGATGGACAATGAAGTACATGAGGACTTAGATGGAACAAATTCAGAGGCGTCACATGAAGCACCACCGGAGGCTCAACCAACTGGTTTTGGATGCAAATCCTGCACATGTGAAGGGTCTTTATCGTCGTGGAATGGCTTACATGGCTGCTGGAGATTTTGA 1869 0.4238 MAANEDAAQDFAPKKKPPSEDEKRKKKIVPGSLMKALVRPGGGDSGPSDGDQVIYHRTIRTLDGVLVESTRYDCGGKGTPIRHVLGKSKMLLGLLEGIPTMLKGEVAMFKMKPQLHYGEDDCPVSAPDGFPKDDELHFEIELIEFFKAKVVTDDLGVVKKVVSEGQGWESPREPYEVKAWISAKTVTGKLIMSHTEGEPYFFTFGKSEVPKGLEMAIGTMVREEKAVIYVTSQYLTESPLMRVADDYDEVHFEVELVHFIQVRDMLGDGRLIKRRIRDGKGDFPMDCPLQDSLLRVHYKGTVLNEEKMVFYDTRVDNDGQPLEFCSGEGLVPEGFEMSVRLMLPGEIALVTCPPDYAYDKFPRPLNVPEGANIQWEIELLGFETPKDWTGLDFKSIMNEAENIRNTGNRLFKEGKYELAKAKYEKVLREFNHVNPQDDEEGKVFADTRNLLHLNVAACLLKLGECKKSIESCNKVLDANPAHVKGLYRRGMAYMAAGDFEEARADFKMMMKVDKSTESDATAALQKLKQKEQEVEKKARKQFKGLFDKKPGEIAEAKADVDGDQITRETQMDNEVHEDLDGTNSEASHEAPPEAQPTGFGCKSCTCEGSLSSWNGLHGCWRF 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01753 622 Gene3D Tetratricopeptide repeat domain 394 548 IPR011990 GO:0005515
Cca01g01753 622 Gene3D - 1 147 IPR046357 GO:0003755
Cca01g01753 622 Gene3D - 261 386 IPR046357 GO:0003755
Cca01g01753 622 SMART tpr_5 449 482 IPR019734 GO:0005515
Cca01g01753 622 SMART tpr_5 400 433 IPR019734 GO:0005515
Cca01g01753 622 SMART tpr_5 483 516 IPR019734 GO:0005515
Cca01g01753 622 Coils Coil 517 540 - -
Cca01g01753 622 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE PASTICCINO1 67 564 IPR031135 GO:0030154|GO:0042761|GO:0099402
Cca01g01753 622 SUPERFAMILY FKBP-like 250 382 - -
Cca01g01753 622 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 50 146 IPR001179 GO:0003755
Cca01g01753 622 SUPERFAMILY FKBP-like 151 259 - -
Cca01g01753 622 MobiDBLite consensus disorder prediction 575 598 - -
Cca01g01753 622 Gene3D - 148 260 IPR046357 GO:0003755
Cca01g01753 622 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 67 564 - -
Cca01g01753 622 MobiDBLite consensus disorder prediction 1 51 - -
Cca01g01753 622 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 47 143 IPR001179 GO:0003755
Cca01g01753 622 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 291 380 IPR001179 GO:0003755
Cca01g01753 622 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 173 256 IPR001179 GO:0003755
Cca01g01753 622 MobiDBLite consensus disorder prediction 9 29 - -
Cca01g01753 622 ProSiteProfiles TPR repeat profile. 483 516 IPR019734 GO:0005515
Cca01g01753 622 Pfam Tetratricopeptide repeat 484 507 IPR019734 GO:0005515
Cca01g01753 622 SUPERFAMILY FKBP-like 25 149 - -
Cca01g01753 622 SUPERFAMILY TPR-like 397 539 IPR011990 GO:0005515
Cca01g01753 622 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 291 383 IPR001179 GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01753 Cca-Chr1 41047878 41057839 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01753 33 548 Calmodulin-binding Proteins AT5G48570 30.418 2.32e-63 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01753 - - ccaj:109790094 1182.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g01753 01 41047878 41057839 Cca01g01753 01 41047878 41057839 ECH