Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01743 ATGGCTTCAGAGCATGGAGAAGAAGTGAAGGTATTGGGGAAATGGAGCAGCCCATTTAGCAACAGAGTAGTTCTCAGTCTCAAACTGAAAGGAGTTGCATACAAATACTCTGAGGAAGACTTTGCCAACAAGAGTGATGACCTACTCAAGTACAACCCCATTCACAAGAAGGTTCCAGTTCTGATCCACAAAGGAAACCCATTACCCGAGTCACTTGTCATCGTTGAATACATAGATGACACGTGGACAAACAACCCCCTCTTGCCTCAAGACCCTTATGAAAGAGCCTTGGCTCGTTTCTGGTCTAAGACCTTAGATGACAAGATCTTGCCTGCTTTATGGAATGCATGCTGGAGTGATGAGAAGGGGCGTGACAAAGCAGTAGAGGAAGCCTTGGAAGCTTTGAAAATCTTGCAGGAGGCACTCAAGGACAAGAGGTTCTTTGGAGGAGAAACCATTGGATTGGTGGATATTGCTGCCAATTTCATTGGTTATTGGGTTGCCATATTGCAAGAAATTGCAGGGTTGGAGTTGCTTACCATTGAGAAATTTCCAAAGTTATATAAATGGAGTCAAGAGTTTGTTAACCACCCTGTGATCAAAGAGAGCCTGCCTCCTAGAGATAAATTGTTTGCTTTCTTCAAGGCTTCTGCTTCAAAGTAG 663 0.4389 MASEHGEEVKVLGKWSSPFSNRVVLSLKLKGVAYKYSEEDFANKSDDLLKYNPIHKKVPVLIHKGNPLPESLVIVEYIDDTWTNNPLLPQDPYERALARFWSKTLDDKILPALWNACWSDEKGRDKAVEEALEALKILQEALKDKRFFGGETIGLVDIAANFIGYWVAILQEIAGLELLTIEKFPKLYKWSQEFVNHPVIKESLPPRDKLFAFFKASASK 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01743 220 SFLD Main.3: Omega- and Tau-like 6 218 IPR045073 -
Cca01g01743 220 SFLD Glutathione Transferase (cytosolic) 6 218 IPR040079 -
Cca01g01743 220 CDD GST_N_Tau 9 82 - -
Cca01g01743 220 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 2 217 IPR045073 -
Cca01g01743 220 CDD GST_C_Tau 92 216 IPR045074 GO:0004364|GO:0006749
Cca01g01743 220 PANTHER GLUTATHIONE S-TRANSFERASE, AMINO-TERMINAL DOMAIN PROTEIN 2 217 - -
Cca01g01743 220 SUPERFAMILY GST C-terminal domain-like 80 217 IPR036282 -
Cca01g01743 220 Pfam Glutathione S-transferase, N-terminal domain 8 79 IPR004045 -
Cca01g01743 220 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 91 219 IPR010987 -
Cca01g01743 220 Gene3D - 88 220 - -
Cca01g01743 220 SUPERFAMILY Thioredoxin-like 9 109 IPR036249 -
Cca01g01743 220 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 7 86 IPR004045 -
Cca01g01743 220 Pfam Glutathione S-transferase, C-terminal domain 115 198 IPR004046 -
Cca01g01743 220 Gene3D Glutaredoxin 2 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01743 Cca-Chr1 40788280 40789813 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01743 7 216 Glutathione S-transferase Gene Family AT3G09270 61.321 6.60e-92 267
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01743 K00799 - gmx:547582 405.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g01743 01 40788280 40789813 Cca01g01743 01 40788280 40789813 ECH