Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01735 ATGTCAGAAAACAGATTAGAACAAGAGAAAGCCAAAACCTACCCTTTTCTCTTTCTCTCCTTCTTTATTCTGATATCTGAAGCCACTGGCGACCCAGAATACAGTTACGGAGTGTGCTACACAAGCGGAAACTACACCCCCAATAGCTCCTACCCCACCAACCTCAAAAACGCTCTTTCCAGGCTCATCTTCAACACACAAATTGACTATGGCTTCTACAGTGCCTCCTACGGCCAAGCTTCCGACAAAGTCTACTCAACTGGCCTTTGCAGAGGGGATGTTACCCCACATGCTTGCCGCACTTGCCTCAACAATTCTGCTTCCCTTCTCCTAAAGCATTGTCCACTACATAAGGAGGCAGAAGGAGGATATGATACATGCAAGTTGCACTATGCATATTACTCCTTAGATGGTTACCAAGAATATAATTTCTGGGTCTACTTGATGTCTGAAACTAATGTAACAGATTGGGATCAGTACAGCTTTGTGCTCAACAAGTTGCTGGCAACACTAAGAGACAAAGCTGCAACCGACTCCCATCTGAAACGTAAATATGCTTCTGGAAATGCCACAGCTCCCAATTCTCAAACTATATATGCTGTTGCTCAGTGCTCACCTGATTTGTCGGTGGGAGAATGCAACGATTGCTTGAATTTAGCCTTTTCGAAACTGCCAGATTGTTGTACTAACAATTCAGGTGGTGGAGTTATTAGATCAACGTGTGATTTCAGATACGACAACTTCAGCTTCTATAAACCTATGGCTGATACATTAACACTACAGTTGTCGCCACAAGGAtctccttctccttcaccttctccttctccttctccttctccttctcctGTACCATCCACCACTGCAAATTCCTCCCAGAGTACTCATCATGGAAAAAGCAACAAATCACAAGCTGTCATCGTCAAAGTTTTGCCTCCTGTTGTTTTTCTTGGACTCCTGATCTTTATTTGCATCTATTTAGAAGTGAGAAAGTCCACAAAACATTTAGAGAGTGAAGCTAAGGTTGATGAAGAAATTGGGCAAGCAGAGTCATTACAATTTGACTTTGACACAATCATAGACGCTACAAACAACTTCTCTGATGCAAACAAACTTGGACAAGGTGGATTTGGACCTGTTTACAAGGGCACTCTCTTCAACGAACAAGAAGTAGCAGTCAAAAGGTTAGCAAACAACTCCAGCCAAGGAGATATTGAATTCAAGAATGAAGTGCTATTGATGTCAAAGCTACATCACGGAAATTTAGTTAGGCTCCTTGGTTTCTGTTTTGAGAGAGAAGAACGACTTCTTGTCTATGAGTTTCTTCCCAATAAAAGTCTTGACAAATTCATATATGATCCCATCCAGCGTGCACATTTGAATTGGAAAAAACGCTACAAAATAATTGAAGGAATTGCACGTGGCCTTCTTTATCTTCATGAGGATTCTCAGCAGAGGATTATTCACCGTGATCTCAAGTTGAGTAATATTCTTTTAGATGCCAATATGAATCCTAAGATTTCAGATTTTGGTTTGGCAAGACTATTTGCTCTGGATCAAACTCAGAATAATACAAGTACCATTGCAGGAACATACGGATACATGGCTCCTGAGTATGCAAGACATGGAAAACTCTCCACGAAGTTAGATGTCTTCAGTTTTGGTGTAATAATACTAGAGATTGTAAGTGGCCGAAAGAATGGTGGACTTTATGATGGAGAGAATGTGGAGCATCTATTAAGCTTTGCTTGGAAAAACTGGAAGAAAGGGACAGCAGCTAATATAATAGATACCACCCTAAATAATGCATTGAGAGATGAAATAGTTCGATGCATTCACATTGGGTTACTTTGTGTTCAAGAAAAGGTTTCTGATAGACCAACAATGGCTTCAGTGGTGCTTATGCTTGATAGACACTCTCTTGCTCTACCAGTTCCATCGAAACCTGCCTATTTTATGAACAATAGTTGTTTATCAGTCATCCAGTTTTCGGGGTGCAATTCAGTGGACGCAGGACCAAATGAGCAGAAAAGTGTCTCTGCTGAGGCATCAGCAAATGAGGCTTCAATTAGTAGTCTACATCCTCGTTAG 2088 0.4009 MSENRLEQEKAKTYPFLFLSFFILISEATGDPEYSYGVCYTSGNYTPNSSYPTNLKNALSRLIFNTQIDYGFYSASYGQASDKVYSTGLCRGDVTPHACRTCLNNSASLLLKHCPLHKEAEGGYDTCKLHYAYYSLDGYQEYNFWVYLMSETNVTDWDQYSFVLNKLLATLRDKAATDSHLKRKYASGNATAPNSQTIYAVAQCSPDLSVGECNDCLNLAFSKLPDCCTNNSGGGVIRSTCDFRYDNFSFYKPMADTLTLQLSPQGSPSPSPSPSPSPSPSPVPSTTANSSQSTHHGKSNKSQAVIVKVLPPVVFLGLLIFICIYLEVRKSTKHLESEAKVDEEIGQAESLQFDFDTIIDATNNFSDANKLGQGGFGPVYKGTLFNEQEVAVKRLANNSSQGDIEFKNEVLLMSKLHHGNLVRLLGFCFEREERLLVYEFLPNKSLDKFIYDPIQRAHLNWKKRYKIIEGIARGLLYLHEDSQQRIIHRDLKLSNILLDANMNPKISDFGLARLFALDQTQNNTSTIAGTYGYMAPEYARHGKLSTKLDVFSFGVIILEIVSGRKNGGLYDGENVEHLLSFAWKNWKKGTAANIIDTTLNNALRDEIVRCIHIGLLCVQEKVSDRPTMASVVLMLDRHSLALPVPSKPAYFMNNSCLSVIQFSGCNSVDAGPNEQKSVSAEASANEASISSLHPR 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01735 695 MobiDBLite consensus disorder prediction 261 299 - -
Cca01g01735 695 Gene3D - 141 250 IPR038408 -
Cca01g01735 695 Gene3D - 33 135 IPR038408 -
Cca01g01735 695 SMART serkin_6 365 608 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g01735 695 MobiDBLite consensus disorder prediction 284 299 - -
Cca01g01735 695 Pfam Protein tyrosine and serine/threonine kinase 369 633 IPR001245 GO:0004672|GO:0006468
Cca01g01735 695 ProSiteProfiles Protein kinase domain profile. 365 641 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g01735 695 CDD STKc_IRAK 371 637 - -
Cca01g01735 695 Gene3D Transferase(Phosphotransferase) domain 1 441 642 - -
Cca01g01735 695 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 13 661 - -
Cca01g01735 695 MobiDBLite consensus disorder prediction 267 283 - -
Cca01g01735 695 ProSitePatterns Serine/Threonine protein kinases active-site signature. 486 498 IPR008271 GO:0004672|GO:0006468
Cca01g01735 695 Gene3D Phosphorylase Kinase; domain 1 326 440 - -
Cca01g01735 695 Pfam Salt stress response/antifungal 39 132 IPR002902 -
Cca01g01735 695 Pfam Salt stress response/antifungal 152 247 IPR002902 -
Cca01g01735 695 MobiDBLite consensus disorder prediction 673 695 - -
Cca01g01735 695 ProSiteProfiles Gnk2-homologous domain profile. 33 136 IPR002902 -
Cca01g01735 695 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 13 661 - -
Cca01g01735 695 ProSiteProfiles Gnk2-homologous domain profile. 142 250 IPR002902 -
Cca01g01735 695 SUPERFAMILY Protein kinase-like (PK-like) 353 659 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01735 Cca-Chr1 40581864 40590846 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01735 31 695 Receptor kinase-like Gene Family AT4G21410 43.695 0.0 537
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Cca01g01735 PK_Tyr_Ser-Thr 9.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01735 - - ccaj:109809491 1357.43