Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01729 ATGGCCGAGGGTTTTGAGGCTTACCATGTGCCACAACAAAGCAGAAGAGATAAGCTAAGAGTTGTGGCGACGCAGAACCAACATGGTCTCGTTGAGCCCTCGACTTTGCTTCCTTTGTACGACCCTTCTTCGTTCATATCTTCTGATTTGTTAACGAGTTTCCACAACAACCAGAAACACAACCTGGGTTGTGGTGTGAAGGAAGAACGTTCGAATTTGATGATGGGTTTTGCAGCAGGAGGAGGAGGAGTCATGAACAATGGCTCTTCTTCTTCCTCGTGCTGCTCCTCTAACTCCTCTTCGGTTTCTTACTTGGATCCTGAATCGTCTTTACCTTTGAACCAAGCTACAATTCAGGTTATTaacaacaacaacaataacagcagcagcaacaacaTGTTTCTCTACCAAGCACAGAACCTGAGAGAGTTCGATCAGGGTTataataataataatactaataataGTGAGATCATGGTGTTTAAGCCTGAGCCTTTGTCTTTGTCTCTCTCATCGCACAACAACAACAGTGTGAATCTTCAGCGATATGGATCTGTGGTTTATGGTGAAAAGGTtggtggggttggtggtggtggtggatgtgtggtttatggtggtTCTGGGTTGAGTGAAGTTTCGAGGGGCACAGTGCCAATGGGGCCATTTACCGGCTATGCTTCTATATTGAAGGGATCGAGGTTCTTGAAGCCTGCGCAGCAATTATTGGAAGAGTTATGTGATGTTGGTGGAGTTTGTGCTGAGAAGATGGTGGCTGATGCATCGTTGATGGAGCCTATTCCTCCTCCTGAGAGTTCAAGTGAAGATCCACTAGGGGATCATGGGGGTGATCAGGGTCGCAAAAAGTCAAGGCTGTTAACTATGCTTGATGAGGTTTACAGGAGGTACAGGCAATACTATCAGCAGATGCACGCAGTAGTAACATCATTTGAGTATGTTTCTGGCCTCAGCAATGCAGCTCCCTATGCAAGTTTGGCTATAAAAGCCATGTCCAAACATTTTAGATGCTTGAAGAATGCAATTACTGACCAGCTTCAGTTTGCCAATAAAGCTCATTTTCACATCAGCAACAGGAAGGATGAATCTCCAAGGTTTGGCAACAGTGATAGAGGCCCTTACAGTCAAAGGCCAGGGTTTCTTGAGCACCAACCTGTCTGGCGGCCTCAAAGAGGACTCCCCGAGCGTGCTGTCACTGTTCTTCGAGCATGGTTGTTTGAGCACTTTCTGCACCCTTATCCCACTGATACTGACAAGCTAATGTTGGCTAAACAAACTGGTCTATCTCGTAGCCAGGTGTCTAATTGGTTCATTAATGCAAGAGTAAGGCTCTGGAAACCAATGGTGGAAGAAATACACATGCTAGAAACACGTCAAGCTCAAAAGAATCCACAAAAAGAAGAGCATTGCAGGAACAAGTCAAGTGATCATTTGCCTTCTGATAACTCCATTGTTTCTGAGAATCCATCATCCTCCACAGATAAATTTCAGGAAGCTCCTTACAAGCGCGCAATAAACGAAGTTCCTAACATTCCAGTTAGGACTCAGGAACAACTGAACCTTCCCTGCACAAGCAATCAGGCAGGAGGGGGTGTTGGAGTGAGCATGGGTGGTGGCAGTGCAAGCAACAGTGTGTCACTGACACTAGGCCTTTACCAAAATCATGGTATTGGTTTGGCTGAACCTTTCCCTTTGAATGCAGCTCAGCGTTTCGGTGTTGGTCTAGAAACCAACAATGAAGGTTATGTTATGAGTGGTTATGAGTCACAAAATAGGCATTTTGGAAGAGATCTCATTGGAGGACAACTGTTGCATGACTTTGTGGGCTGA 1845 0.4314 MAEGFEAYHVPQQSRRDKLRVVATQNQHGLVEPSTLLPLYDPSSFISSDLLTSFHNNQKHNLGCGVKEERSNLMMGFAAGGGGVMNNGSSSSSCCSSNSSSVSYLDPESSLPLNQATIQVINNNNNNSSSNNMFLYQAQNLREFDQGYNNNNTNNSEIMVFKPEPLSLSLSSHNNNSVNLQRYGSVVYGEKVGGVGGGGGCVVYGGSGLSEVSRGTVPMGPFTGYASILKGSRFLKPAQQLLEELCDVGGVCAEKMVADASLMEPIPPPESSSEDPLGDHGGDQGRKKSRLLTMLDEVYRRYRQYYQQMHAVVTSFEYVSGLSNAAPYASLAIKAMSKHFRCLKNAITDQLQFANKAHFHISNRKDESPRFGNSDRGPYSQRPGFLEHQPVWRPQRGLPERAVTVLRAWLFEHFLHPYPTDTDKLMLAKQTGLSRSQVSNWFINARVRLWKPMVEEIHMLETRQAQKNPQKEEHCRNKSSDHLPSDNSIVSENPSSSTDKFQEAPYKRAINEVPNIPVRTQEQLNLPCTSNQAGGGVGVSMGGGSASNSVSLTLGLYQNHGIGLAEPFPLNAAQRFGVGLETNNEGYVMSGYESQNRHFGRDLIGGQLLHDFVG 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01729 614 Pfam Associated with HOX 228 348 IPR006563 -
Cca01g01729 614 MobiDBLite consensus disorder prediction 462 481 - -
Cca01g01729 614 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 19 588 - -
Cca01g01729 614 SUPERFAMILY Homeodomain-like 394 459 IPR009057 -
Cca01g01729 614 Pfam Homeobox KN domain 409 448 IPR008422 GO:0003677|GO:0006355
Cca01g01729 614 ProSiteProfiles 'Homeobox' domain profile. 389 452 IPR001356 GO:0003677
Cca01g01729 614 SMART HOX_1 392 456 IPR001356 GO:0003677
Cca01g01729 614 MobiDBLite consensus disorder prediction 462 504 - -
Cca01g01729 614 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 19 588 - -
Cca01g01729 614 SMART prehox3 223 349 IPR006563 -
Cca01g01729 614 MobiDBLite consensus disorder prediction 482 502 - -
Cca01g01729 614 MobiDBLite consensus disorder prediction 263 286 - -
Cca01g01729 614 Gene3D - 395 457 - -
Cca01g01729 614 MobiDBLite consensus disorder prediction 364 385 - -
Cca01g01729 614 CDD homeodomain 392 453 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01729 Cca-Chr1 40439036 40446510 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01729 150 614 Homeobox Transcription Factor Family AT5G02030 50.610 2.28e-127 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Cca01g01729 POX 3.4e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01729 - - gmx:100805512 1018.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g01729 01 40439036 40446510 Cca01g01729 01 40439036 40446510 ECH