Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01726 ATGTTGAACCGTGCGTCAAATGTTTCGGCTGAAGTGGTTGGTTCGGGTGAGAGTGAGGATGAGCTGTATGAGCAGCTGTGGAAGGCTTGCGCGGGACCACTTGTGGATGTTCCTCGTGTTGGCCACAGAGTGTTCTATTTTCCGCAAGGTCACATGGAGCAAttgGAGGCTTCAACCAACCAGGAATTGAATCAGAGGATTCCTCTGCTGAAGCTTCCCACGAAGATCCTTTGTCGTGTCATCAACGTTCATTTACTGGCTGAACAAGAAACGGACGAGGTTTATGCGCAGATCACTTTGGTGCCGGAATCTAATGTAAGGATGGCACCGGTTCACTCGTTCTGCAAGGTCTTAACTGCTTCAGATACCAGCACCCATGGTGGCTTCTCGGTTCTCAGGAAACATGCCACGGAATGCCTTCCTGCGTTGGACTTGTCCCAACCAACACCAACTCAGGAATTGGTCGCGAAGGATCTTCATGGCTATGAATGGCGCTTTAAGCATATATTTAGAGGTCAACCTCGCAGACACTTGCTCACGACTGGATGGAGTACTTTTGTGACATCCAAGAGATTGGTTGCTGGAGATACCTTTGTCTTTTTGAGAGGGGCCAATGGGGAGTTACGTGTTGGTGTGAGACGTCTAGCTCGTCAGGCAAGTAGCATGCCTTCATCTGTGATTTCCAGTCAGAGCATGCACCTGGGAGTTCTCGCAACCGCTTCTCATGCTGTTTCAACTCAGACTCTTTTTGTAGTATATTATAAGCCAAGGACGAGCCAGTTCATCATAGGCGTGAACAAGTATTTGCAGGCCATGGACAACAAGTTTAGCGTTGGCATGAGGTTTAGGATGAGATTTGAGGGGGATGATTCTGCTGAGACTGACAAAAGATTTTCGGGTACTATAGTTGGAGTGGAAGATATTTCTCCTTATTGGGTAAATTCAAAATGGCGATCCCTCAAGGTTCAATGGGATGAACCTGCAGCTGTTCCAAGACCTGATAGGGTTTCACCATGGGAGATAGAACCCTTTGTTGCTTCTGCTTCTACTCCTTCGGTCCAACCTGCTATAGTAAAGACTAAAAGGCCCCGACCTCCCAGCGAAATTCCAGAAGTTGACACGACGTCTGCTGCTTCTGTTTTCTGGGATGCTGGTCTGCCACAGGCTGATAATATGGCACAAATCAATGTTTTGGCTGAAAGCAAACGGAATGAAAATACTGGTACATGGCATCATTTGCAAACTGACATGAATAGTAAAAGCAACAGCAACAACACTATGTTGAGGAATCAGACAGAAGGAAGTTGGCTATCTTCTCCCCATTCCAGTTGCCCACCTCACTTGTTTCAGGACACAACAGATGATAGCAAGAGTGTCTCAGCTTGGCCTGTTTCAAAGCCTCCCTCATCCAGATTGAACCATGACCATGCACCCGACCAAGTTGACAAGGAGAGCAAAGTTGAGACAGCTACAAGTTATCGTTTATTTGGAATTGAGCTTATTGATCATTCTAGGAACTCACCTGCTTTGGAGAAGGCATCTGCACATGCAGTAAATGTACCCAAAGTTACTACCGAAGGCAGTGCCAGCACCTTGTCCCGAGCCGATGCTGGCCAAAAGTCGGAGGTACCAAGGGCTTCTTCGAAAGAGAGGAAACAAGAACAGCAACAAGTATCCCCAAAGGAGAGTCAGAGCAAGCAAATTTGTCGAAGTCGCACCAAGGTTCAAATGCAGGGTGTTGCGGTGGGGCGTGCTGTGGATTTGACCATGTTGGATGGGTATAAGCAACTTATAAATGCATTGGAGGAGATGTTTGACATAAAGGGACAACTTCAACACAGGAATAAATGGGAAATTGTCTTCACCGATGACGAAGGGGACATGATGCTTGTAGGAGATGATCCATGGCCTGAGTTCTGTAATATGGTGAGAAGAATCTTCATTTGTTCAAGTCAGGATGTGAAGAAGATGAGTTCTGGAAGCAAACTTCCAATCTCTTCTTCAGTGGAAGATGGGACCGTAATAAGCTCAGACACAACCGAAACCTGA 2049 0.4671 MLNRASNVSAEVVGSGESEDELYEQLWKACAGPLVDVPRVGHRVFYFPQGHMEQLEASTNQELNQRIPLLKLPTKILCRVINVHLLAEQETDEVYAQITLVPESNVRMAPVHSFCKVLTASDTSTHGGFSVLRKHATECLPALDLSQPTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFLRGANGELRVGVRRLARQASSMPSSVISSQSMHLGVLATASHAVSTQTLFVVYYKPRTSQFIIGVNKYLQAMDNKFSVGMRFRMRFEGDDSAETDKRFSGTIVGVEDISPYWVNSKWRSLKVQWDEPAAVPRPDRVSPWEIEPFVASASTPSVQPAIVKTKRPRPPSEIPEVDTTSAASVFWDAGLPQADNMAQINVLAESKRNENTGTWHHLQTDMNSKSNSNNTMLRNQTEGSWLSSPHSSCPPHLFQDTTDDSKSVSAWPVSKPPSSRLNHDHAPDQVDKESKVETATSYRLFGIELIDHSRNSPALEKASAHAVNVPKVTTEGSASTLSRADAGQKSEVPRASSKERKQEQQQVSPKESQSKQICRSRTKVQMQGVAVGRAVDLTMLDGYKQLINALEEMFDIKGQLQHRNKWEIVFTDDEGDMMLVGDDPWPEFCNMVRRIFICSSQDVKKMSSGSKLPISSSVEDGTVISSDTTET 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01726 682 MobiDBLite consensus disorder prediction 543 557 - -
Cca01g01726 682 MobiDBLite consensus disorder prediction 472 487 - -
Cca01g01726 682 SUPERFAMILY CAD & PB1 domains 572 646 - -
Cca01g01726 682 Pfam Auxin response factor 240 321 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cca01g01726 682 Pfam AUX/IAA family 613 654 IPR033389 -
Cca01g01726 682 Pfam AUX/IAA family 511 606 IPR033389 -
Cca01g01726 682 MobiDBLite consensus disorder prediction 412 467 - -
Cca01g01726 682 Pfam B3 DNA binding domain 114 214 IPR003340 GO:0003677
Cca01g01726 682 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 16 670 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cca01g01726 682 MobiDBLite consensus disorder prediction 521 537 - -
Cca01g01726 682 PANTHER AUXIN RESPONSE FACTOR 16 670 - -
Cca01g01726 682 Gene3D - 275 350 - -
Cca01g01726 682 ProSiteProfiles PB1 domain profile. 570 651 IPR000270 GO:0005515
Cca01g01726 682 Gene3D - 565 658 - -
Cca01g01726 682 MobiDBLite consensus disorder prediction 412 487 - -
Cca01g01726 682 MobiDBLite consensus disorder prediction 512 570 - -
Cca01g01726 682 SMART B3_2 114 216 IPR003340 GO:0003677
Cca01g01726 682 Gene3D - 111 215 IPR015300 -
Cca01g01726 682 ProSiteProfiles B3 DNA-binding domain profile. 114 216 IPR003340 GO:0003677
Cca01g01726 682 CDD B3_DNA 112 214 IPR003340 GO:0003677
Cca01g01726 682 SUPERFAMILY DNA-binding pseudobarrel domain 110 243 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01726 Cca-Chr1 40356008 40360602 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01726 22 663 B3 DNA Binding Superfamily AT4G23980 57.967 0.0 700
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Cca01g01726 AUX_IAA 1.6e-12 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01726 K14486 - gmx:100779003 1203.73