Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01705 ATGTTGGGTCTCTCCATCAGTTACCCAGGACGCCCTCAACACCATCACCAACCCCGCAATCTACCTCACATACATTGCTACAGATTATATCCAATGCCACCATTCCTAAACATCACCATCCGACCTGGCATGTTACTCGTAGGCTCTTTACCCGAAGGACCCCACATCAGTAACTTTCAAAGTCATGGCTGCTACTTTGCTTCTCCTCACAAAGAAAATGCAGAAAAAAGGGAACTTGGTCAATGTTGGACCAAGAGGAAGTACTCTTTGAGCTCTAATCTTACTTCACCAACAAACCCTTCCTATGGAGACTCATGGGAAGAACAAGCTTTTGCAGAAGATGCTGCTAATTCTCTTGGTGGCTGCATATGGCCTCCGAGGTCATACTCTTGTAGCTTTTGCAGAAGAGAGTTCAGATCAGCACAGGCTCTAGGTGGCCACATGAATGTTCACAGAAGGGATAGAGCAAGACTAAAGCAACAACCCTCTAGCCCCCACAATGAAATTCTATGCCATGACCTTGAAACTCAACTCCACAAGCCAGTTCAAAGTCCTTTTGCTTCTTTCGGTGGTTTCCTATACCCTTCTCCAGTTTGTGGATTGGCTCATGAGAAAACTAACCCTAATTCTGATCTTGATTTTGTTGCCTCACCTTCATCATCACCCTCTCCTTCCAAGGCCTTGTTAGCTCCGTCAGTTAATGGTAGCAGCTGCAGAGAGGAAACCATGATTCCACTTTATGATTCCTCTATTCTCCACAAGATTTCTCCAGTCCATAATTCTTCTGAATCATGGCCAAATTTAGCTGAAGATCACAGATTATATTCATGTAAGTTCCACCCTCAAGCTGATACTAAGAAACCCTCCAAGGGAATAATGGATTCTAGGTGTAGGGGTAATAAGAAGGGTAATGATGATAGTGATGGGGCTATGAGCTGGAATTCAGTTGTGTGTAGAACTCACACATCTTCACAGTTTGAGAGTACTGAAGAGGCAGATCATATCATCAGTTGCAAGAAGAGGAAAACAGATGCTTCCTCAACTCTATTTCCCCCAAAGTCAAGCTCTGTTGATAGACATCATATGCAGCCAAAGATGTTTGAACTTAACCCTAGCTCAATGGAAGAGCTAGATCTGGAGTTAAGGCTTGGTAACAGGTCCAAGGTATAG 1170 0.4393 MLGLSISYPGRPQHHHQPRNLPHIHCYRLYPMPPFLNITIRPGMLLVGSLPEGPHISNFQSHGCYFASPHKENAEKRELGQCWTKRKYSLSSNLTSPTNPSYGDSWEEQAFAEDAANSLGGCIWPPRSYSCSFCRREFRSAQALGGHMNVHRRDRARLKQQPSSPHNEILCHDLETQLHKPVQSPFASFGGFLYPSPVCGLAHEKTNPNSDLDFVASPSSSPSPSKALLAPSVNGSSCREETMIPLYDSSILHKISPVHNSSESWPNLAEDHRLYSCKFHPQADTKKPSKGIMDSRCRGNKKGNDDSDGAMSWNSVVCRTHTSSQFESTEEADHIISCKKRKTDASSTLFPPKSSSVDRHHMQPKMFELNPSSMEELDLELRLGNRSKV 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01705 389 ProSitePatterns Zinc finger C2H2 type domain signature. 131 151 IPR013087 -
Cca01g01705 389 PANTHER C2H2 AND C2HC ZINC FINGER PROTEIN 78 388 - -
Cca01g01705 389 MobiDBLite consensus disorder prediction 210 234 - -
Cca01g01705 389 MobiDBLite consensus disorder prediction 282 305 - -
Cca01g01705 389 ProSiteProfiles Zinc finger C2H2 type domain profile. 129 156 IPR013087 -
Cca01g01705 389 SUPERFAMILY beta-beta-alpha zinc fingers 126 155 IPR036236 -
Cca01g01705 389 PANTHER OS07G0101800 PROTEIN 78 388 - -
Cca01g01705 389 Pfam C2H2-type zinc finger 129 153 - -
Cca01g01705 389 SMART c2h2final6 129 151 IPR013087 -
Cca01g01705 389 Gene3D Classic Zinc Finger 126 178 - -
Cca01g01705 389 MobiDBLite consensus disorder prediction 341 371 - -
Cca01g01705 389 MobiDBLite consensus disorder prediction 282 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01705 Cca-Chr1 39539540 39545521 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01705 105 160 C2H2 Transcription Factor Family AT2G37740 82.143 3.37e-25 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01705 - - gmx:100801427 540.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01518 05 34256432 34257516 Cca01g01705 01 39539540 39545521 ECH
Cca07g01438 07 37623453 37624694 Cca01g01705 01 39539540 39545521 ECH
Cca01g01705 01 39539540 39545521 Cca05g01518 05 34256432 34257516 ECH
Cca01g01705 01 39539540 39545521 Cca01g01705 01 39539540 39545521 ECH