Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01700 ATGTTCAACATGCTCCTCCAACTCTTGTTTTTCTTGCTGTTCCTTCTGATCCCAGCTTCATCTCAGCCTAACCAGATCTTCTATGCTGGATTCAAGGGTGTGGGAGGCACCAACATGACCCTCAATGGAGTAGCAGAAATAGAGCACAATGGGGTACTGAAACTCACAAATGATTTAAGTAAAGTTATAGGTCATGCTTTTTATCCGACTGCTTTTCAGTTCAAGAGCACTAGTGATGGTAAAGCTTTCTCCTTTTCCTCCTCTTTTGCATTGGTTATTGTTCCTGAGTATCCAAAGCTAGGAGGGCATGGCCTTGCTTTTACTATTGCAACTTCTAAGGATCTGAAAGCACTTCCAAGCCAGTATCTTGGTCTTCTCAACTCAAGTGACATAGGGAACTTCTCCAACCACCTTTTTGCTGTTGAGTTTGACACAGCCCAAGATTTTGAGTTTGGGGACATCAATGACAACCATGTTGGAATTGACATCAATAGCTTGGCCTCCAATGATTCTGCACCTGCAGGTTACTACACAGGGGATGGTGATTCAACCAAGCAAAATCTCACTCTCAAGAGTGGGAAACCAATTCTAGCTTGGGTTGATTATGATTCTTCCCAAAGTGTGATCCATGTTACAATTTCTCCATCTTCTACTAAACCCAAAAGGCCACTCTTGTCCTTCCCTGTGGATCTTTCACCAATCCTTAAGGATTCCATGTATGTTGGGTTCTCTGCATCAACAGGGTTGCTTGCAAGCTCCCATTACATCTTGGGTTGGAGCTTCCAAATCAATGGACCAGCTCCACCCCTTGATCTCAATAGTCTCCCACAGCTTCCAGGGCCAAAGAAGAAACACACATCTCTGATAGTTGGGGTTTCAGTCTCTTGTGTTGTTCTTGCATTGTGTGTTATCTTACTTGGTATTTACATGTACAGAAGATACAAGAATGCTGATGTTATAGAAGCTTGGGAGCTTGAGATTGGACCACATAGGTACTCCTACCAAGAGCTCAAGAAAGCAACTAAAGGTTTCAAGGACAAAGAGCTGCTTGGACGAGGTGGATTTGGGAGTGTCTACAAAGGAACATTGCCAAACTCCAATACCCTAGTTGCTGTCAAGAGAATTTCACATGACTCCAACCAAGGCCTGAGGGAGTTTGTGTCGGAAATAGCCAGCATCGGCCGGCTTCGCCACCGGAATTTGGTCCAGTTGCTGGGGTGGTGTCGCCGCCGCGGTGACCTCCTCCTTGTGTATGATTTCATGGCTAATGGGAGCTTAGACAAGTACTTGTTTGATGATCCAGAAACAATCCTGAGTTGGGAGCAAAGGTTTAAGGTCATAAAGGATGTTGCTTCAGCCCTTTTGTATCTGCATGAGGGCTATGAGCAGGTTGTCATACATAGAGATGTGAAGGCTAGCAATGTGCTGTTAGATGGTGAACTCAATGGAAGACTAGGAGATTTTGGATTAGCAAGATTGTATGACCATGGTGCTAACCCTAGTACCACAAGGGTGGTGGGGACCTTGGGGTATTTGGCACCTGAATTGCCTAGGACAGGTAAGGCCACACCTAGCTCTGATGTTTTTGCATTTGGTGCACTTTTGCTGGAGGTGGCATGTGGTCTCAGACCACTTGAGCCAAAGGCATTGCCTGAAGATATGGTTTTGGTTGATTGTGTGTGGAAAAAATACAAACAAGGGAGAATACTTGATGTGGTGGACCCTAAACTGAATGGTCATTTTAATGAAAGAGAGGTTCTCATGGTGTTGAAATTGGGGCTTTTATGTTCAAATGGTGCACCTGCTTCTAGGCCTAGTATGAGACAAGTGGTTAGGTATTTGCATGGAGAAGCTGGTTTGCCAGATGAGTTGAGGAAGCCAGAAGAGGTAGGTTTCCAGGAGGGATTTGATGAATTCTTGCACTCACTTGAATCTCCTTCCTTTGATCAGATAAGCACAAGTTCCTTTGGTAGAAATAGAGACACGGATGCTAGTTTTCCTTATTTTGCTAATACAAGGTGA 2022 0.4446 MFNMLLQLLFFLLFLLIPASSQPNQIFYAGFKGVGGTNMTLNGVAEIEHNGVLKLTNDLSKVIGHAFYPTAFQFKSTSDGKAFSFSSSFALVIVPEYPKLGGHGLAFTIATSKDLKALPSQYLGLLNSSDIGNFSNHLFAVEFDTAQDFEFGDINDNHVGIDINSLASNDSAPAGYYTGDGDSTKQNLTLKSGKPILAWVDYDSSQSVIHVTISPSSTKPKRPLLSFPVDLSPILKDSMYVGFSASTGLLASSHYILGWSFQINGPAPPLDLNSLPQLPGPKKKHTSLIVGVSVSCVVLALCVILLGIYMYRRYKNADVIEAWELEIGPHRYSYQELKKATKGFKDKELLGRGGFGSVYKGTLPNSNTLVAVKRISHDSNQGLREFVSEIASIGRLRHRNLVQLLGWCRRRGDLLLVYDFMANGSLDKYLFDDPETILSWEQRFKVIKDVASALLYLHEGYEQVVIHRDVKASNVLLDGELNGRLGDFGLARLYDHGANPSTTRVVGTLGYLAPELPRTGKATPSSDVFAFGALLLEVACGLRPLEPKALPEDMVLVDCVWKKYKQGRILDVVDPKLNGHFNEREVLMVLKLGLLCSNGAPASRPSMRQVVRYLHGEAGLPDELRKPEEVGFQEGFDEFLHSLESPSFDQISTSSFGRNRDTDASFPYFANTR 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01700 673 SMART serkin_6 344 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g01700 673 Pfam Legume lectin domain 27 275 IPR001220 GO:0030246
Cca01g01700 673 SUPERFAMILY Concanavalin A-like lectins/glucanases 10 268 IPR013320 -
Cca01g01700 673 SUPERFAMILY Protein kinase-like (PK-like) 326 636 IPR011009 -
Cca01g01700 673 PANTHER - 5 656 - -
Cca01g01700 673 ProSitePatterns Protein kinases ATP-binding region signature. 350 373 IPR017441 GO:0005524
Cca01g01700 673 CDD lectin_legume_LecRK_Arcelin_ConA 28 265 IPR001220 GO:0030246
Cca01g01700 673 ProSiteProfiles Protein kinase domain profile. 344 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g01700 673 CDD STKc_IRAK 350 614 - -
Cca01g01700 673 Pfam Protein kinase domain 344 549 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g01700 673 Gene3D Phosphorylase Kinase; domain 1 329 420 - -
Cca01g01700 673 Gene3D - 26 264 - -
Cca01g01700 673 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE S.4 5 656 - -
Cca01g01700 673 Gene3D Transferase(Phosphotransferase) domain 1 421 628 - -
Cca01g01700 673 ProSitePatterns Serine/Threonine protein kinases active-site signature. 465 477 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01700 Cca-Chr1 39362813 39365337 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01700 28 628 Receptor kinase-like Gene Family AT3G55550 62.336 0.0 761
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Cca01g01700 Pkinase 5e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01700 - - gmx:100801247 1156.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01507 05 34138565 34140889 Cca01g01700 01 39362813 39365337 ECH
Cca07g01430 07 37429307 37432626 Cca01g01700 01 39362813 39365337 ECH
Cca01g01700 01 39362813 39365337 Cca05g01507 05 34138565 34140889 ECH
Cca01g01700 01 39362813 39365337 Cca01g01700 01 39362813 39365337 ECH
Cca07g01645 07 41807848 41809668 Cca01g01700 01 39362813 39365337 PCT