Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01698 ATGCCTGTAAGAGTATTGGACAACACCACCCCTTCTCAGGTTCAAGGTGCGAATTCGGGAAAGACTTCGTTCCAATATTGTAGTCTTCTTGGCGTGGGGCAGGCCTTTTCTGGCACTCAGAATGTTTCAAGTGTACAAAAGGATGAAGCATGGAGAGTAAATGTCCGTATACAAGGATGTGACCTTGAGCATGGGTATTTGTGTGGCACCATGGAAGCACTAAATGTTCCTATGGCAGACACACCAGTAGTAACATTCTGGGAAGGGGAGATTGTTGATACAAAGAATTATACCTTCTTCACTGGCAAATGGGAGGCAACACAAGAGGATGATACAAGGCACTGGTCTAAATTTTCATCTTTTTCTCCCTTAATGGCCCAAGTGGAGTCTGATGGTGGCAAGTCTTTGGACCTGAGCAACTATCCTTACATATTTATGAGATGGAAGGAGCAGTACTTTGTGAATGTTGGAACTGACTGTGGATTAACTATAGCCGGATTTTACTACATTTGTTTCTCTTGCAGTGATGGCTCTATCAGTGGATTCTATTATGATCCCAATAGCAGCCCTTACCAGAAGCTTGAGTTGAAATCAACTAATGATGGGAGATCAGAGGTGTGGCTTTCAAGGTCTGATAATACCTTTAAAGAAGTTGGTGAACCTATTGCACTCAAGAGTAGTTATGAAAATGAAGATTTTCAAGAGGTTTTCTCAATGTGTCTAGAGAAGGAGGTTTCTTGCATGCCCGAAGTTGACTATACAAAGTACTTACACTCCAACAATTTGGTTTTTCATAGGTGTAGAGTTATTCAATGGTTTATCAAATGTAGAAGTCGCTTTAATCTTTCTTTTGGGACAGTCTTCTTGGCTATTAATTATCTTGATCGCTTTGTATCCATTTGTCAATGCAATGCTTGGGAATACTGGATGCTTGAATTGCTTTCCATTACATGCTTATTGATTGCCTTAAAGTTCAATGAGATGTCAGCACTTTCGTTGAATGAAATTCAGGTGGAGGGCTTGCACTATTCATTCCAATCAAATGTAATTTTGAAAATGGAGCTGATCCTATTGAAGGCTCTGGGTTGGCGCCTTAACTCTATGACAAGTTATTCTTTTGTAGAAATGCTACATGTTGATTTCTTTGAACCTTTTCTTTATGAGAAATTTATTTCACGAGTCACTGATCTCCTTCTCCAAGCTACTTTAGATCAGAAAATGCTGGAATTCAGGCCAAGCATTGTTGGAATATCTGCATTGTGGTGCACTCTAGACCAGTTATTTCCATCAACATCAGATACTTACATTACTTATATTATGAGACTCTTGAACCAAAGTCAGAAGGATGATATCATTAAGTGTCACAAGTTGATGGAAACGCAGACTTCATTGTGGTGTGAAAATCACCATTATTGCCCTCTAAGCCCAACAACAGTACTATTGAATCGCATTTATGATTAA 1461 0.3936 MPVRVLDNTTPSQVQGANSGKTSFQYCSLLGVGQAFSGTQNVSSVQKDEAWRVNVRIQGCDLEHGYLCGTMEALNVPMADTPVVTFWEGEIVDTKNYTFFTGKWEATQEDDTRHWSKFSSFSPLMAQVESDGGKSLDLSNYPYIFMRWKEQYFVNVGTDCGLTIAGFYYICFSCSDGSISGFYYDPNSSPYQKLELKSTNDGRSEVWLSRSDNTFKEVGEPIALKSSYENEDFQEVFSMCLEKEVSCMPEVDYTKYLHSNNLVFHRCRVIQWFIKCRSRFNLSFGTVFLAINYLDRFVSICQCNAWEYWMLELLSITCLLIALKFNEMSALSLNEIQVEGLHYSFQSNVILKMELILLKALGWRLNSMTSYSFVEMLHVDFFEPFLYEKFISRVTDLLLQATLDQKMLEFRPSIVGISALWCTLDQLFPSTSDTYITYIMRLLNQSQKDDIIKCHKLMETQTSLWCENHHYCPLSPTTVLLNRIYD 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01698 486 Pfam Cyclin, C-terminal domain 369 461 IPR004367 -
Cca01g01698 486 SUPERFAMILY Cyclin-like 230 366 IPR036915 -
Cca01g01698 486 Pfam Vacuolar import and degradation protein 32 198 IPR018618 -
Cca01g01698 486 Pfam Cyclin, N-terminal domain 235 366 IPR006671 -
Cca01g01698 486 CDD CYCLIN 265 358 IPR013763 -
Cca01g01698 486 PANTHER VACUOLAR IMPORT AND DEGRADATION PROTEIN 24 12 212 - -
Cca01g01698 486 SMART cyclin_7 271 359 IPR013763 -
Cca01g01698 486 Gene3D - 236 459 - -
Cca01g01698 486 Gene3D - 250 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01698 Cca-Chr1 39316734 39326536 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01698 241 462 Core Cell Cycle Gene Families AT1G70210 29.956 8.09e-27 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01698 K23335 - gmx:100796349 396.741
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g01698 01 39316734 39326536 Cca01g01698 01 39316734 39326536 ECH