Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01686 ATGACAATGAATCCACACCTTATGGGATTTTCTGGTTCCACAAATGAGGTTCGCTTAGGAAATCAATCTTTGCCAACTCTTCAGAATCAGGGATTTGGCACTGGACCCAGATTTGAAAATCTCTTCTTTGATCGAAGTAGGAAATTTGATTACCTTCAATCTGATCCAAATACAATGCCAGCTAACACACCTTCATCCTCCACTGTGACCCATGAGGAGCATTCTCCAGAGGACTGTGATTTTTCTGATGCAGTTTTGAGTTACATCAACCAGATCCTCATGGAGGAAGACATGGAGGACAAGACATGCATGCTTCAAGATTCTTTAGATATTCAAGCAGCTGAGAAATCATTCTATGAGGTGCTGGGGGAAAAGTACCCACCCTCTCCAAGACATCCAAGCCTTATCAATCCAAATGATGGGGTTGGAGGTTGTGACTTCAATGGAGATTATGACAATTGTCCTGATACTAATGGGGATCTCATGAGCATTTTTACTAACCATTTTTTACCACCAAACACAGGTAACTTTCATGCACATAGTTTTCATGGTAGTAGCATTTCACATGCATCTTACAACCCTTCCAATAGTGTGGAAGGGCTTGTAGATTCTCCAAACAATATTGTTCAGGTTCCTGATCTGAGCAGTGAAAGTCAATCCATTTGGCAATTCCAGAAAGGTGTTGAGGAGGCTAGTAAGTTCCTTCCAAGTGCAAATTGGCTGTTTGATAATTTGTCACAACCAAAGCCAAAAGTAGAAAATGATGATTTGTCAGTTAAAGTGGAGAAGAAGGAGAAGGAGGAGGGGGGATGTGTTGTTGGTGGATCCAAAGGAAGGAAACATCCTCAAATGGAagaaacagatgctgaagaaaacagaagcagtaagcaAGCGGCAATTTTTCCTGAACCAACATTGCGGTCAGATATGGCTGATATAATTCTGCTTCATAGCACTGGGGATGGAAAGGAACATTTTGTGGCTCGCCGCGAGGCTTTGCAGAATAAGACCAACAAGGGAATGTTGCCAAAAGGTCAATCAAAAGCATCCAGCAATGGGAAGGGGCGCAGTAAGAAACAAGGTGGGAAGAAGGAAGTGGTTGATTTGAGAACACTTCTGGTTCTGTGTGCACAAGCTGTTGCGGCAGATGACCATAGGAATGCCAATGAGTTGCTTAAGCAGATCAGGCAACACTCAACCCCTTTTGGGGATGGAAATCAAAGGCTAGCTCATATCTTTGCAGATGGCCTTGAGGCGCGTTTGGCTGGTATTGGCAGCCAAATTTACAAAGGACTTGTTAGTATAAGAACATCAGCTGCTAATGTTCTAAAAGCTTACCATCTATACCTTGCTGCATGCCCCTTTAGGAAAATCTCCAACTTTACCTCAAACGTCACAATAAGGGCATCTTCAGCACAATCAATGCAGGTCCATGTTATAGATTTTGGCATCCTTTATGGTTTCCAATGGCCAACTTTTATACAACGACTTTCATGGAGAACAGGAGGACCACCAAAGCTACGGATCACTGGAATAGACTTCCCACAACCCGGTTTCAGGCCAGCAGAAAGAGTTATAGAAACAGGACGTCGCTTGGCAGCTTATGCTGAATCCTTTAATGTTCCATTTGAGTATAAAGCCATAGCAAAGAAATGGGACACTATCCAACTTGAGGAACTTGAGATTGATAGGGATGAGTTCCTTGTTGTTACTTGTTTATATAGAGGTAAGAACTTGCTGGATGAATCTGTTGTAGTGGAAAGTCCGAGGAACAATTTCCTCAGTCTGATTAGGAAGATCAACCCAAAGTTGTTTATTCATGGCATCATGAATGGGGCATTTAATGCCCCTTTCTTTGTTACCAGATTCCGGGAGGCACTGTTTCACTACTCATCACTGTTTGATATGCTTGAGACTATTGTGCCACGTGAGGACTGGGAGAGGATGCTGATAGAGAAAGAGATATTCGGGAGGGAAGCATTGAATGTCATAGCTTGTGAAGGGTCTGAAAGAGTGGAAAGGCCAGAGAGCTATAAGCAGTGGCAAGCACGCATTCTGCGGGCCGGTTTTTTGCAACAATCTTTTGATCACAACACAGTGAAGATGGCAATGGAGAAAGTAAGGTGCAGCTACCACAAGGATTTTTTGATCGATGAAGATAGCCAGTGGTTGTTGCAAGGTTGGAAGGGGCGCATCATCTATGCCCTTTCTTGTTGGAAGCCTGCATGA 2229 0.4262 MTMNPHLMGFSGSTNEVRLGNQSLPTLQNQGFGTGPRFENLFFDRSRKFDYLQSDPNTMPANTPSSSTVTHEEHSPEDCDFSDAVLSYINQILMEEDMEDKTCMLQDSLDIQAAEKSFYEVLGEKYPPSPRHPSLINPNDGVGGCDFNGDYDNCPDTNGDLMSIFTNHFLPPNTGNFHAHSFHGSSISHASYNPSNSVEGLVDSPNNIVQVPDLSSESQSIWQFQKGVEEASKFLPSANWLFDNLSQPKPKVENDDLSVKVEKKEKEEGGCVVGGSKGRKHPQMEETDAEENRSSKQAAIFPEPTLRSDMADIILLHSTGDGKEHFVARREALQNKTNKGMLPKGQSKASSNGKGRSKKQGGKKEVVDLRTLLVLCAQAVAADDHRNANELLKQIRQHSTPFGDGNQRLAHIFADGLEARLAGIGSQIYKGLVSIRTSAANVLKAYHLYLAACPFRKISNFTSNVTIRASSAQSMQVHVIDFGILYGFQWPTFIQRLSWRTGGPPKLRITGIDFPQPGFRPAERVIETGRRLAAYAESFNVPFEYKAIAKKWDTIQLEELEIDRDEFLVVTCLYRGKNLLDESVVVESPRNNFLSLIRKINPKLFIHGIMNGAFNAPFFVTRFREALFHYSSLFDMLETIVPREDWERMLIEKEIFGREALNVIACEGSERVERPESYKQWQARILRAGFLQQSFDHNTVKMAMEKVRCSYHKDFLIDEDSQWLLQGWKGRIIYALSCWKPA 742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01686 742 MobiDBLite consensus disorder prediction 263 295 - -
Cca01g01686 742 MobiDBLite consensus disorder prediction 339 356 - -
Cca01g01686 742 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 49 741 IPR005202 -
Cca01g01686 742 ProSiteProfiles GRAS family profile. 360 740 IPR005202 -
Cca01g01686 742 MobiDBLite consensus disorder prediction 53 78 - -
Cca01g01686 742 MobiDBLite consensus disorder prediction 334 363 - -
Cca01g01686 742 Pfam GRAS domain family 369 740 IPR005202 -
Cca01g01686 742 Coils Coil 740 742 - -
Cca01g01686 742 MobiDBLite consensus disorder prediction 53 70 - -
Cca01g01686 742 MobiDBLite consensus disorder prediction 263 293 - -
Cca01g01686 742 PANTHER SCARECROW-LIKE PROTEIN 9 49 741 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01686 Cca-Chr1 38735204 38738927 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01686 77 741 GRAS Transcription Factor Family AT2G37650 55.376 0.0 691
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Cca01g01686 GRAS 3e-112 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01686 - - gmx:100780785 1268.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g01686 01 38735204 38738927 Cca01g01686 01 38735204 38738927 ECH
Cca01g01686 01 38735204 38738927 Cca10g00403 10 4199642 4201899 ECH
Cca01g01686 01 38735204 38738927 Cca04g00633 04 6246505 6249114 ECH