Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01683 ATGGGTGCTTGTTGGAGCAGTAGGATTAAGGCTGTGAGTCCTTCCAATACAGGGTTCACTTCAAGAAGTGTGAGCAGAGATGGCTATGACATCCACTCAGGTAGCAGGAACTCATCAGCCTCCATGCCCATGACCCCTCGGAGTGAGGGAGAGATCTTACAATCTTCCAATATGAAAAGCTACAGCTACAATGAGCTAAAAACGGCCACAAAAAACTTCTGCCTAGACAGTGTCTTAGGAGAGGGTGGATTTGGTTCAGTTTTTAAGGGCTGGATTGATGAACATTCGCTTGCTGTTACCAGGCCAGGAACTGGCATGGTTGTTGCTGTGAAGAGACTTAACCAAGAGGGGTTCCAGGGTCACAAGGAATGGTTGGCTGAAATAAACTATCTTGGACAACTGCAGCATCCTAATCTTGTCAAGTTGATAGGATACTGCTTAGAGGATCAGCACCGGCTTCTAGTTTATGAATATATGCCTAAAGGCAGTGTGGAGAATCATCTGTTCAGGAGAGGATCTCATTTTCAGCAGCTTTCTTGGACTCTACGATTGAAAATAGCCCTTGGGGCTGCAAGGGGTCTTGCTTTTCTCCATAGCACGGAAACTAAAGTCATATACCGTGACTTTAAGACCTCCAATATCCTGCTTGATACTAACTATAATGCCAAACTTTCTGATTTTGGGCTGGCCAGAGATGGACCAACTGGTGATAAGAGCCATGTTTCTACAAGGGTCATGGGAACCCATGGTTATGCAGCACCAGAGTATCTAGCAACAGGTCACCTAACTGCCAAGAGTGATGTCTATAGTTTTGGAGTAGTTCTTTTGGAAATGTTATCAGGAAGACGTGCCATAGACAAGAACCGGCCCTCAGGAGAACAATGCCTAGTTGAATGGGCAAAACCTTACCTCTCTAACAAGCGTAGAGTTTTTCGTGTAATGGATAGTCGTCTTGAAGGGCAGTATTCCCTCACACAAGCTCAGAGGGCAGCCAGCCTTTCTTTTCGATGTCTTTCTGTAGAGCCTAAATACAGGCCAAATATGGATGAGGTGGTGAGAGCATTGGAGCAGCTACTTGAATCAAATCATCAGCTGAAAAATGGTGATCATAAAATGCGTAGAGCAAGTGGTGATGGTCTTGGCCATCTCAATGGACTCACTCCATCTACTAGCAAAGGAGGTGCAGATTCTCCCAAAATGTTTGCTTATCCAAGGCCTTCTGCTTCTCTTCTCTATGCTTAA 1242 0.4517 MGACWSSRIKAVSPSNTGFTSRSVSRDGYDIHSGSRNSSASMPMTPRSEGEILQSSNMKSYSYNELKTATKNFCLDSVLGEGGFGSVFKGWIDEHSLAVTRPGTGMVVAVKRLNQEGFQGHKEWLAEINYLGQLQHPNLVKLIGYCLEDQHRLLVYEYMPKGSVENHLFRRGSHFQQLSWTLRLKIALGAARGLAFLHSTETKVIYRDFKTSNILLDTNYNAKLSDFGLARDGPTGDKSHVSTRVMGTHGYAAPEYLATGHLTAKSDVYSFGVVLLEMLSGRRAIDKNRPSGEQCLVEWAKPYLSNKRRVFRVMDSRLEGQYSLTQAQRAASLSFRCLSVEPKYRPNMDEVVRALEQLLESNHQLKNGDHKMRRASGDGLGHLNGLTPSTSKGGADSPKMFAYPRPSASLLYA 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01683 413 PANTHER KINASE 1B 23 392 - -
Cca01g01683 413 ProSitePatterns Serine/Threonine protein kinases active-site signature. 204 216 IPR008271 GO:0004672|GO:0006468
Cca01g01683 413 SUPERFAMILY Protein kinase-like (PK-like) 39 355 IPR011009 -
Cca01g01683 413 MobiDBLite consensus disorder prediction 377 400 - -
Cca01g01683 413 Pfam Protein kinase domain 76 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g01683 413 MobiDBLite consensus disorder prediction 13 48 - -
Cca01g01683 413 Gene3D Phosphorylase Kinase; domain 1 48 158 - -
Cca01g01683 413 ProSitePatterns Protein kinases ATP-binding region signature. 79 111 IPR017441 GO:0005524
Cca01g01683 413 Gene3D Transferase(Phosphotransferase) domain 1 159 378 - -
Cca01g01683 413 ProSiteProfiles Protein kinase domain profile. 73 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g01683 413 CDD STKc_IRAK 79 358 - -
Cca01g01683 413 PANTHER OS01G0588500 PROTEIN-RELATED 23 392 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01683 Cca-Chr1 38579279 38583715 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01683 36 355 Glycoside Hydrolase AT3G07070 48.036 3.25e-103 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Cca01g01683 Pkinase 2.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01683 - - gmx:100818744 767.689