Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01681 ATGCCTTCAATGCTTCCCCTCTGCATTGCATCATTGCTCACTCTTTTTGTCGCAACCACTGCTAGAATTCCCGGCGTCTACACCGGCGGTGCATGGCAGGGTGCCCACGCCACTTTCTACGGCGGAAATGACGCCTCCGGAACAATGGGTGGGGCATGTGGGTACGGGAACCTATACAGCCAAGGGTACGGGGTAAACACGGCAGCACTAAGCACGGCACTGTTCAACAAAGGGTTGAGCTGCGGCGCGTGTTTCGAGATCAGGTGCGACGAGGATCCACGGTGGTGCAACCCCGGAAGGCCCTCCATCACCATCACCGCCACCAACTTTTGCCCTCCCAACTTCGCTCTCCCCAGCGACAATGGCGGCTGGTGCAACCCTCCCCGCCCCCACTTCGACCTCGCCATGCCCGTCTTCCTCAAGATCGCCCAGTACCGCGCCGGAATCGTCCCCGTCAGTTACCGCCGGGTCCCGTGTAGAAAGGCTGGTGGAATGAGATTCACGATGAACGGTTTCCGTTACTTCAACCTGGTTCTGATCACGAACGTGGCGGGTGCAGGGGATATCGTGCGCGTGAGCGTGAAGGGAACAAGGACTAGTTGGAACAGCATGAGCCGGAACTGGGGGCAAAATTGGCAATCGAACGGTGATTTAGTGGGGCAGGCCCTTTCCTTCAGAGTCACGGGCAGCGACAGGCGCACCTCGACCTCGTGGAACGTGGCACCCTCTCATTGGCAGTTCGGCCAGACCTTCATGGGCAAGAATTTCCGCGTCTAA 777 0.5882 MPSMLPLCIASLLTLFVATTARIPGVYTGGAWQGAHATFYGGNDASGTMGGACGYGNLYSQGYGVNTAALSTALFNKGLSCGACFEIRCDEDPRWCNPGRPSITITATNFCPPNFALPSDNGGWCNPPRPHFDLAMPVFLKIAQYRAGIVPVSYRRVPCRKAGGMRFTMNGFRYFNLVLITNVAGAGDIVRVSVKGTRTSWNSMSRNWGQNWQSNGDLVGQALSFRVTGSDRRTSTSWNVAPSHWQFGQTFMGKNFRV 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01681 258 SMART dpbb_1 67 154 IPR007112 -
Cca01g01681 258 PANTHER EXPANSIN-A15 5 257 IPR002963 GO:0009664
Cca01g01681 258 Pfam Lytic transglycolase 67 154 IPR009009 -
Cca01g01681 258 PANTHER EXPANSIN 5 257 - -
Cca01g01681 258 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 174 253 IPR007117 -
Cca01g01681 258 SUPERFAMILY Barwin-like endoglucanases 31 182 IPR036908 -
Cca01g01681 258 PRINTS Expansin/Lol pI family signature 31 46 IPR007118 GO:0005576
Cca01g01681 258 PRINTS Expansin/Lol pI family signature 49 67 IPR007118 GO:0005576
Cca01g01681 258 PRINTS Expansin/Lol pI family signature 71 89 IPR007118 GO:0005576
Cca01g01681 258 PRINTS Expansin/Lol pI family signature 147 163 IPR007118 GO:0005576
Cca01g01681 258 PRINTS Expansin/Lol pI family signature 201 215 IPR007118 GO:0005576
Cca01g01681 258 PRINTS Expansin/Lol pI family signature 239 253 IPR007118 GO:0005576
Cca01g01681 258 PRINTS Expansin signature 62 76 IPR002963 GO:0009664
Cca01g01681 258 PRINTS Expansin signature 89 100 IPR002963 GO:0009664
Cca01g01681 258 PRINTS Expansin signature 103 113 IPR002963 GO:0009664
Cca01g01681 258 PRINTS Expansin signature 122 139 IPR002963 GO:0009664
Cca01g01681 258 PRINTS Expansin signature 139 152 IPR002963 GO:0009664
Cca01g01681 258 PRINTS Expansin signature 163 175 IPR002963 GO:0009664
Cca01g01681 258 PRINTS Expansin signature 175 196 IPR002963 GO:0009664
Cca01g01681 258 PRINTS Expansin signature 210 231 IPR002963 GO:0009664
Cca01g01681 258 PRINTS Expansin signature 239 255 IPR002963 GO:0009664
Cca01g01681 258 SUPERFAMILY PHL pollen allergen 162 252 IPR036749 -
Cca01g01681 258 Gene3D - 165 256 IPR036749 -
Cca01g01681 258 Pfam Expansin C-terminal domain 165 242 IPR007117 -
Cca01g01681 258 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 50 164 IPR007112 -
Cca01g01681 258 Gene3D - 18 160 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01681 Cca-Chr1 38551360 38553841 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01681 5 258 Expansin Gene Family AT2G39700 81.323 3.46e-157 435
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01681 - - gmx:100803595 510.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01493 05 33883767 33885180 Cca01g01681 01 38551360 38553841 ECH
Cca07g01399 07 36725310 36728573 Cca01g01681 01 38551360 38553841 ECH
Cca10g00408 10 4249084 4250053 Cca01g01681 01 38551360 38553841 ECH
Cca04g00637 04 6294682 6296736 Cca01g01681 01 38551360 38553841 ECH
Cca01g01681 01 38551360 38553841 Cca01g01681 01 38551360 38553841 ECH