Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01676 ATGGAAATGAAGGAAAGGCAACGTTGGAAGTCTGAAGAGGATGCATTGTTATGTGCTTATGTGAGACAGTATGGTCCTAGAGAATGGAATCTTGTATCTCAGCGCATGAACACGCCTCTTAACAGGGATGCAAAGTCATGCTTGGAAAGGTGGAAGAACTACCTCAAGCCTGGCATCAAGAAAGGCTGTCTAACCGAAGAAGAGCAGCGTCTTGTGATCCGGCTTCAAGCGAAACATGGCAACAAGTGGAAGAAAATCGCTGCAGAAGTTCCTGGTAGAACTGCCAAGAGGTTAGGCAAGTGGTGGGAGGTGTTCAAAGAGAAACAACAAAGGGAGAAACAAGAGATTCACAAAGCAATTGGCCCAGTTGATGACACCAAATATGATCATATACTAGAGACTTTTGCTAAGAAACTAGTGAAAGAACAACACCCTTCACAATCACCATACCTTATGGTTGCTGCATCTAATGGACctgcatctgcatctgcatctgcatcATCGGCATTGTTTCCTCCTTGGCTTTCAAATTCTAGCAGCACCAATCCCTCATCAGCAATTAGGCCACCTTCCCCTTCTGTGACACTAAGTCTCTCCTCCTCAACAGCGTGGCTACAACCCGAAAGACGACTAGGGAATGCAGCAACACCTCATGGTGGATCTGTTTCAGCCTTCGGTGATAACATGATGGTCTCAGAGTTGATAGAGTGCTGTAAGGAGTTGGAAGAAGGGTATCGTGCTTGGGTGGTGCACAGGAAGGAGGCGGCTTGGCGGTTGAGAAGGGTGGAGCTGCAGTTGGAGGCAGAGAAGGCAAGCCGAAGGAAGGAAAAGATGGATGAAATTGAGGCAAAGATTAAGGCTCTTTGGGTGGAACAGAATGCTGTTTTGGATAGAATTGAATCAGAATGCAGAGAACAGTTAGCAGGGATGAGGAGAGATGCAGAAAACAAGGAGCAGAAGTTGGCTGAGCAATGGAATGCAAAGCACATGAGGGTAGTGAAATGTATGGAGCAAGTAGGATGCAGAATGCCACAGATTGCTGAGCCTAATGGAAGATAA 1059 0.4533 MEMKERQRWKSEEDALLCAYVRQYGPREWNLVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGCLTEEEQRLVIRLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREKQEIHKAIGPVDDTKYDHILETFAKKLVKEQHPSQSPYLMVAASNGPASASASASSALFPPWLSNSSSTNPSSAIRPPSPSVTLSLSSSTAWLQPERRLGNAATPHGGSVSAFGDNMMVSELIECCKELEEGYRAWVVHRKEAAWRLRRVELQLEAEKASRRKEKMDEIEAKIKALWVEQNAVLDRIESECREQLAGMRRDAENKEQKLAEQWNAKHMRVVKCMEQVGCRMPQIAEPNGR 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01676 352 CDD SANT 65 106 IPR001005 -
Cca01g01676 352 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 56 110 IPR017930 -
Cca01g01676 352 Gene3D - 64 121 - -
Cca01g01676 352 Pfam Myb-like DNA-binding domain 63 96 IPR001005 -
Cca01g01676 352 Pfam Myb-like DNA-binding domain 6 55 IPR001005 -
Cca01g01676 352 Coils Coil 300 324 - -
Cca01g01676 352 Gene3D - 6 60 - -
Cca01g01676 352 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 55 IPR017930 -
Cca01g01676 352 SUPERFAMILY Homeodomain-like 6 100 IPR009057 -
Cca01g01676 352 ProSiteProfiles Myb-like domain profile. 1 55 IPR001005 -
Cca01g01676 352 PANTHER PROTEIN ROUGH SHEATH 2 HOMOLOG 3 352 - -
Cca01g01676 352 PANTHER TRANSCRIPTION FACTOR AS1 3 352 IPR031055 GO:0005634|GO:0006351|GO:0010338
Cca01g01676 352 SMART sant 5 57 IPR001005 -
Cca01g01676 352 SMART sant 60 108 IPR001005 -
Cca01g01676 352 Coils Coil 261 281 - -
Cca01g01676 352 CDD SANT 8 55 IPR001005 -
Cca01g01676 352 ProSiteProfiles Myb-like domain profile. 56 106 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01676 Cca-Chr1 38477774 38480257 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01676 3 343 MYB Transcription Factor Family AT2G37630 60.377 6.88e-143 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca01g01676 Myb_DNA-binding 1.3e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01676 K09422 - qsu:111993035 466.077