Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01674 ATGGCAACAAGTGGAAGAAAATCGCTGCAGAAGTTCCTGGTAGAACTGCCAAGAGAGACTTTTGCTGAGAAACTAGTGAAAGAACAACACTCTTCACAATCACCATACCTTCTGGTTGCTGCATCTAATGGACCTGCATCTGCATCTGCATCATCGGCATTGTTTCCTCCTTGGCTTTCAAATTCTAGCAGCACCAATCCCTCAAAGTTGATAGAGTGCTGTAAGGAGTTGGAAGAAGGGTATCGAGCTTGGGTGGTGCACAGGAAGGAGGTGGCTTGGCGGTTGAGAAGGGTGGAGCTGCAGTTGGAGGCAGAGAAGGCGAGCCGAAGGAAGACAAAGATGGATATCAGTTCAGGGGATACAGATGCCCGTATTCTAGAAGGAAGCTAG 390 0.4846 MATSGRKSLQKFLVELPRETFAEKLVKEQHSSQSPYLLVAASNGPASASASSALFPPWLSNSSSTNPSKLIECCKELEEGYRAWVVHRKEVAWRLRRVELQLEAEKASRRKTKMDISSGDTDARILEGS 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01674 129 MobiDBLite consensus disorder prediction 107 129 - -
Cca01g01674 129 PANTHER TRANSCRIPTION FACTOR AS1 19 66 IPR031055 GO:0005634|GO:0006351|GO:0010338
Cca01g01674 129 PANTHER TRANSCRIPTION FACTOR AS1 68 120 IPR031055 GO:0005634|GO:0006351|GO:0010338
Cca01g01674 129 PANTHER PROTEIN ROUGH SHEATH 2 HOMOLOG 68 120 - -
Cca01g01674 129 PANTHER PROTEIN ROUGH SHEATH 2 HOMOLOG 19 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01674 Cca-Chr1 38469324 38469818 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01674 41 115 MYB Transcription Factor Family AT2G37630 53.333 1.31e-19 80.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01674 K09422 - aof:109842684 88.1965