Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01673 ATGAAGGAAAGGCAACGTTGGAAGTCTGAAGAGGATGCCTTGTTATGTGCTTATGTGAGACAGTATGGTCCTAGGGAATGGAATCTTGTATCTCAGCGCATGAACACGCCTCTTAACAGGGATGCAAAGTCATGCTTGGAAAGGTGGAAGAACTACCTCAAGCCTGGCATCAAGAAAGGCTCTCTAAGCGAAGAAGAGTAG 201 0.4627 MKERQRWKSEEDALLCAYVRQYGPREWNLVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLSEEE 66
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01673 66 Gene3D - 4 58 - -
Cca01g01673 66 Pfam Myb-like DNA-binding domain 7 66 - -
Cca01g01673 66 ProSiteProfiles Myb-like domain profile. 1 53 IPR001005 -
Cca01g01673 66 SMART sant 3 55 IPR001005 -
Cca01g01673 66 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 57 IPR017930 -
Cca01g01673 66 SUPERFAMILY Homeodomain-like 3 63 IPR009057 -
Cca01g01673 66 CDD SANT 6 53 IPR001005 -
Cca01g01673 66 PANTHER PROTEIN ROUGH SHEATH 2 HOMOLOG 1 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01673 Cca-Chr1 38469095 38469295 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01673 1 66 MYB Transcription Factor Family AT2G37630 87.879 1.49e-36 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Cca01g01673 Myb_DNA-bind_6 1.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01673 K09422 - gmx:100809813 134.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g01673 01 38469095 38469295 Cca01g01673 01 38469095 38469295 ECH