Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01665 ATGAACACGCCTCTTAACAGGGATGCAAAGTCATGCTTGGAAAGGTGGAAGAACTACCTCAAGCCTGGCATCAAGAAAGGCTGTCTAACCGAAGAAGAGCAGCGTCTTGTGATCCGGCTTCAAGCGAAACATGGCAACAAGTGGAAGAAAATCGCTGCAGAAGTTCCTGGTAGAACTGCCAAGAGGTTAGGCAAGTGGTGGGAGGTGTTCAAAGAGAAACAACAAAGGGAGAAACAAGAGATTCACAAAGCAATTGGCCCAGTTGATGACACCAAATATGATCATATACTAGAGACTTTTGCTGAGAAACTAGTGAAAGAACAACACCCTTCACAATCACCATACCTTATGGTTGCTGCATCTAATGGACctgcatctgcatctgcatctgcatcATCGGCATTGTTTCCTCCTTGGCTTTCAAATTCTAGCAGCACCAATCCCTCATCAGCAATTAGGCCACCTTCCCCTTCTGTGACACTAAGTCTCTCCTCCTCAACAGCGTGGCTACAACCCGAAAGACGACTAGGGAATGCAGCAACACCTCATGGTGGATCTGTTTCAGCCTTCGGTGATAACATGATGGTCTCAGAGTTGATAGAGTGCTGTAAGGAGTTGGAAGAAGGGTATCGTGCTTGGGTGGTGCACAGGAAGGAGGCGGCTTGGCGGTTGAGAAGGGTGGAGCTGCAGTTGGAGGCAGAGAAGGCAAGCCGAAGGAAGGAAAAGATGGATGAAATTGAGGCAAAGATTAAGGCTCTTTGGGTGGAACAGAATGCTGTTTTGGATAGAATTGAATCAGAATGCAGAGAACAGTTAGCAGGGATGAGGAGAGATGCAGAAAACAAGGAGCAGAAGTTGGCTGAGCAATGGAATGCAAAGCACATGAGGGTAGTGAAATGTATGGAGCAAGTAGGATGCAGAATGCCACAGATTGCTGAGCCTAATGGAAGATAA 954 0.457 MNTPLNRDAKSCLERWKNYLKPGIKKGCLTEEEQRLVIRLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREKQEIHKAIGPVDDTKYDHILETFAEKLVKEQHPSQSPYLMVAASNGPASASASASSALFPPWLSNSSSTNPSSAIRPPSPSVTLSLSSSTAWLQPERRLGNAATPHGGSVSAFGDNMMVSELIECCKELEEGYRAWVVHRKEAAWRLRRVELQLEAEKASRRKEKMDEIEAKIKALWVEQNAVLDRIESECREQLAGMRRDAENKEQKLAEQWNAKHMRVVKCMEQVGCRMPQIAEPNGR 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01665 317 Pfam Myb-like DNA-binding domain 28 61 IPR001005 -
Cca01g01665 317 PANTHER PROTEIN ROUGH SHEATH 2 HOMOLOG 1 317 - -
Cca01g01665 317 SUPERFAMILY Homeodomain-like 6 74 IPR009057 -
Cca01g01665 317 Coils Coil 226 246 - -
Cca01g01665 317 Gene3D - 29 86 - -
Cca01g01665 317 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 21 75 IPR017930 -
Cca01g01665 317 CDD SANT 30 71 IPR001005 -
Cca01g01665 317 PANTHER TRANSCRIPTION FACTOR AS1 1 317 IPR031055 GO:0005634|GO:0006351|GO:0010338
Cca01g01665 317 SMART sant 25 73 IPR001005 -
Cca01g01665 317 Coils Coil 265 289 - -
Cca01g01665 317 ProSiteProfiles Myb-like domain profile. 21 71 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01665 Cca-Chr1 38397067 38398020 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01665 1 308 MYB Transcription Factor Family AT2G37630 58.580 2.46e-122 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Cca01g01665 Myb_DNA-binding 2.4e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01665 K09422 - zju:107430642 405.216