Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01664 ATGAAGGAAAGGCAACGTTGGAAGTCTGAAGAGGATGCATTGTTATGTGCTTATGTGAGACAGTATGGTCCTAGAGAATGGAATCTTGTATCTCAGCGCATGAACACGCCTCTTAACAGGGATGCAAAGTCATGCTTGGAAAGGTGGAAGAACTACCTCAAGCCTGGCATCAAGAAAGGCTGTCTAACCGAAGAAGAGCAGCGTCTTGTGATCCGGCTTCAAGCGAAACATGGCAACAAGTGGAAGAAAATCGCTGCAGAAGTTCCTGGTAGAACTGCCAAGAGGTTAGGCAAGTGGTGGGAGGTGTTCAAAGAGAAACAACAAAGGGAGAAACAAGAGATTCACAAAGCAATTGGCCCAGTTGATGACACCAAATATGATCATATACTAGAGACTTTTGCTGAGAAACTAGTGAAAGAACAACACCCTTCACAATCACCATACCTTATGGTTGCTGCATCTAATGGACctgcatctgcatctgcatctgcatcATCGGCATTGTTTCCTCCTTGGCTTTCAAATTCTAGCAGCACCAATCCCTCATCAGCAATTAGGCCACCTTCCCCTTCTGTGACACTAAGTCTCTCCTCCTCAACAGCGTGGCTACAACCCGAAAGACGACTAGGGAATGCAGCAACACCTCATGGTGGATCTGTTTCAGCCTTCGGTGATAACATGATGGTCTCAGAGTTGATAGAGTGCTGTAAGGAGTTGGAAGAAGGGTATCGTGCTTGGGTGGTGCACAGGAAGGAGGCGGCTTGGCGGTTGAGAAGGGTGGAGCTGCAGTTGGAGGCAGAGAAGGCAAGCCGAAGGAAGGAAAAGATGGATGAAATTGAGGCAAAGATTAAGGCTCTTTGGGTGGAACAGAATGCTGTTTTGGATAGAATTGAATCAGAATGCAGAGAACAGTTAGCAGGGATGAGGAGAGATGCAGAAAACAAGGAGCAGAAGTTGGCTGAGCAATGGAATGCAAAGCACATGAGGGTAGTGAaatgtattttatgtttcctttacctttgtatctcatag 1032 0.4399 MKERQRWKSEEDALLCAYVRQYGPREWNLVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGCLTEEEQRLVIRLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREKQEIHKAIGPVDDTKYDHILETFAEKLVKEQHPSQSPYLMVAASNGPASASASASSALFPPWLSNSSSTNPSSAIRPPSPSVTLSLSSSTAWLQPERRLGNAATPHGGSVSAFGDNMMVSELIECCKELEEGYRAWVVHRKEAAWRLRRVELQLEAEKASRRKEKMDEIEAKIKALWVEQNAVLDRIESECREQLAGMRRDAENKEQKLAEQWNAKHMRVVKCILCFLYLCIS 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01664 343 ProSiteProfiles Myb-like domain profile. 1 53 IPR001005 -
Cca01g01664 343 Pfam Myb-like DNA-binding domain 61 94 IPR001005 -
Cca01g01664 343 Pfam Myb-like DNA-binding domain 4 53 IPR001005 -
Cca01g01664 343 Coils Coil 259 279 - -
Cca01g01664 343 CDD SANT 6 53 IPR001005 -
Cca01g01664 343 SUPERFAMILY Homeodomain-like 4 98 IPR009057 -
Cca01g01664 343 SMART sant 58 106 IPR001005 -
Cca01g01664 343 SMART sant 3 55 IPR001005 -
Cca01g01664 343 Gene3D - 4 58 - -
Cca01g01664 343 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 53 IPR017930 -
Cca01g01664 343 PANTHER TRANSCRIPTION FACTOR AS1 1 333 IPR031055 GO:0005634|GO:0006351|GO:0010338
Cca01g01664 343 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 54 108 IPR017930 -
Cca01g01664 343 ProSiteProfiles Myb-like domain profile. 54 104 IPR001005 -
Cca01g01664 343 CDD SANT 63 104 IPR001005 -
Cca01g01664 343 Coils Coil 298 322 - -
Cca01g01664 343 Gene3D - 62 119 - -
Cca01g01664 343 PANTHER PROTEIN ROUGH SHEATH 2 HOMOLOG 1 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01664 Cca-Chr1 38395595 38396626 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01664 1 334 MYB Transcription Factor Family AT2G37630 60.606 1.64e-140 401
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca01g01664 Myb_DNA-binding 1.3e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01664 K09422 - qsu:111993035 444.891