Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01660 ATGGAGCATATTCCCCCCTCTGAAATTCCTCATTCTCGACACCGCAGGGTTCGTCCCAAAAGCAGTGTCCAGTTTGATGACAAAGTCATCTTTCATGATGACAATGGTAACCTCATCTATGTTAATGATCCCATCAAGACTAATGAAAAGTATGAGTTTGCAGGCAATGAGATCCGAACCAGCAGATACACTCTTCTCAACTTCTTGCCCAAGAACCTTTTCATCCAGTTCCACCGGGTTGCTTATCTCTATTTCCTTGCCATTGCTGCTCTCAATCAGCTTCCTCCACTTGCCGTTTTCGGCCGAACTGTGTCCCTTTTCCCCCTTTTGTTTGTGCTTTGTGTCACAGCTTTCAAGGATGCCTATGAGGATTGGCGCAGGCACAGGTCGGATAGCCATGAAAACAACCGCCAGAGCCTGGTTCTTCAATCCGCTCAGTTCCGCCCCAAGAGATGGAAAAATATACAGGCTGGTGATGTTGTTAAAATCCTTGCTGATGAGATGATTCCTGCTGACATTGTCTTGTTGGGGACAAGTGATCAGAGTGGGGTTGCCTATATTCAGACGATGAATTTGGATGGTGAGTCGAATCTGAAGACAAGGTATGCTAAGCAGGAAACAACTTCATTGGTGTTGCCAGATGCTTGTGCTGTCTCTGGAGTTATTACATGTGAGCCACCCAATCGGAATATTTATGAGTTCACAGCCAACATGGAGCTCAATGGGCATAAGTTTCCCCTTAACCAGTCAAACATTGTGTTGCGTGGTTGTGTTCTGAAGAATACGGAGTGGATAATTGGTGTAGTGGTTTATGCAGGACAGCAAACAAAAGCAATGTTGAACAGTGCAGCTTCCCCTTCCAAGAGAAGCAAGCTGGAAAGTTACATGAACAGAGAAACTTTTTGGTTGTCAGTTTTTCTTTTCATCATGTGCGCTGTTGTGGCCCTTGGGATGGGTCTCTGGCTGGTACGCCACAAGGATCAGCTTGATACCTTGCCTTACTACAGAAAAACATACGTCACCAACGGGCCGGATAATGGAAAGCATTACAGGTATTATGGGATACCGATGGAAACATTCTTCTCCTTTTTGAGTTCTATTATAGTGTTTCAGATAATGATACCAATATCTCTTTACATCACAATGGAGTTGGTCCGTTTGGGTCAGTCATACTTCATGATAGGGGATAGGGATATGTATGATGCTAACTCTGGAACAAGGTTCCAGTGTAGATCATTAAATATAAATGAAGATTTGGGTCAAATACGCTACGTGTTTTCAGACAAGACCGGGACACTAACAGAAAACAAAATGCAGTTTAAAAGAGCTAGTGTACATGGAAAGAACTATGGAAGCTCCTTGCTTATAGCTGGTAATAATACGGCAGCAGCCGATAGTGGTAAACAAATATGGAAGCTCAAATCTGAAATTCCAGTTGATTCTGAACTAGTGGCATTGTTGCAGAAAGACTCAAATAGAGATGAAAGAATTACTGCACATGAGTTTTTCCTTACATTGGCTGCTTGTAATACTGTGATCCCCATTATTTGTAGCAGTACATTTCCCAGTTGTGGAAAAGGAGAATCAAATAAAAACATAGAATGTATTGATTACCAGGGAGAATCTCCTGATGAACAAGCTCTAGTTTCTGCTGCCTCTGCATATGGATATACTCTATTTGAGCGAACATCTGGAAACATTGTTATCGACGTCAATGGTGAGAAACTCAGGTTGGATGTATTGGGGCTGCATGAGTTTGATAGTGTGCGAAAGAGGATGTCTGTTGTTATACGGTTTCCTGACAATGTGGTTAAGGTGTTGGTTAAAGGTGCTGATACTTCAATGTTTAGCATTTTAGCACATGGCGAGGAAAGCAACAATGGCATATGGCAAGAAACTCAGAGCCATTTAAATGAATATTCTTTGCAAGGTTTACGAACGCTTGTAATTGCCTCCAGGGATCTTTCAGATTCCGAACTTGAGGAGTGGCAAAGCATGTATGAAGATGCGAGCACTTCATTGACTGATAGATCTGCAAAACTACGTCAAATAGCAGCTCTTATAGAATGCAAACTAAAGCTACTTGGAGCAACTGCAATTGAGGACAGGCTACAGGAGGGTGTACCAGAAGCTATCGAATCCCTGCGACAAGCTGGAATCAAGGTCTGGGTTCTCACTGGTGATAAACAAGAGACCGCAATTTCAATTGGTCTTTCTTGTAAACTTCTGAGTGTAGATATGCAGCAGATAGTTATAAATGGCACTTCAGAGGTTGAGTGCAGTAATCTCTTGGCTGATGCTAAAGCGAAGTATGGTGTGAGATCTTCAAGTAGAGGACATCAGAATCCGAAGTGCGAAACTGATTCTAAACATGGTGGCCCTGATATTCACAATGGCACAAAATCCTTGAGCATGCCCAAGTGGAATCCTGGAAAGGAGGAGGGAACTACTGCTCAATTGGCTCTCATAATTGATGGGACTAGTTTGGTTTATATTTTGGAGAAGGAACTACAGTCAGAGCTTTTCGACCTTGCAACTTCCTGTAGGGTTGTGCTATGCTGCCGTGTTGCACCCTTGCAGAAAGCAGGAATTGTTGATCTGATAAAAAGCCGCACAGATGATCTAACATTAGCCATAGGTGATGGGGCAAATGATGTATCAATGATCCAAATGGCAGATGTTGGTGTTGGAATATGTGGGCAGGAAGGGCGCCAAGCAGTGATGGCATCAGATTTTGCCATGGGACAATTCCAGTTCTTGAAAAAATTGCTTTTGGTTCATGGGCACTGGAATTATCAGCGTATTGGTTATTTAGTTCTGTACAACTTCTACCGCAATGCTGTCTTTGTGCTTATGCTATTCTGGTATATATCATGCACCGCTTTTTCTACCACTTCAGCATTGACAGATTGGAGCAGTGTACTTTATTCTGTGATATACACTTCTATCCCCACGGTCATTGTTGGTGTTCTGGACAAAGACTTGAGTCATAGGACTCTCCTACAGTATCCAAAATTGTATGGTGCAGGTCACCGGCACGAGGCTTATAATATGCAATTATTTTGGATCACAATGCTTGACACACTATGGCAGAGTCTTGTTCTCTTCTACATTCCTGTATTTACCTATAAGGACAGCACACTTGATATATGGAGCATGGGCAGTTTATGGACAATTTCGGTTGTTATCCTTGTAAATGTACACCTGGCTATGGACATTAACCAATGGGCACTAGTTAATCATGTTGCTGTATGGGGATCCATAGTCATTACATATGGTTGTGTGGTGATATTGGATTCTATACCAGTCTTTCCCAATTACGGGACTATTTATCATTTGGCAAGGTCCCCTACATATTGGATGACAATTTTGTTCATAATAATATTGGCGTTGCTACCTCGCTTTTTTTGCAAAGCTAAACTAGAGAATCTCATTGGAACAGTGTCATTGTATTTGTCCATCACATTGCATTCTCGAGGCAGTTGGCTGTATAAGTGGCCAGGTGAGTAG 3510 0.4239 MEHIPPSEIPHSRHRRVRPKSSVQFDDKVIFHDDNGNLIYVNDPIKTNEKYEFAGNEIRTSRYTLLNFLPKNLFIQFHRVAYLYFLAIAALNQLPPLAVFGRTVSLFPLLFVLCVTAFKDAYEDWRRHRSDSHENNRQSLVLQSAQFRPKRWKNIQAGDVVKILADEMIPADIVLLGTSDQSGVAYIQTMNLDGESNLKTRYAKQETTSLVLPDACAVSGVITCEPPNRNIYEFTANMELNGHKFPLNQSNIVLRGCVLKNTEWIIGVVVYAGQQTKAMLNSAASPSKRSKLESYMNRETFWLSVFLFIMCAVVALGMGLWLVRHKDQLDTLPYYRKTYVTNGPDNGKHYRYYGIPMETFFSFLSSIIVFQIMIPISLYITMELVRLGQSYFMIGDRDMYDANSGTRFQCRSLNINEDLGQIRYVFSDKTGTLTENKMQFKRASVHGKNYGSSLLIAGNNTAAADSGKQIWKLKSEIPVDSELVALLQKDSNRDERITAHEFFLTLAACNTVIPIICSSTFPSCGKGESNKNIECIDYQGESPDEQALVSAASAYGYTLFERTSGNIVIDVNGEKLRLDVLGLHEFDSVRKRMSVVIRFPDNVVKVLVKGADTSMFSILAHGEESNNGIWQETQSHLNEYSLQGLRTLVIASRDLSDSELEEWQSMYEDASTSLTDRSAKLRQIAALIECKLKLLGATAIEDRLQEGVPEAIESLRQAGIKVWVLTGDKQETAISIGLSCKLLSVDMQQIVINGTSEVECSNLLADAKAKYGVRSSSRGHQNPKCETDSKHGGPDIHNGTKSLSMPKWNPGKEEGTTAQLALIIDGTSLVYILEKELQSELFDLATSCRVVLCCRVAPLQKAGIVDLIKSRTDDLTLAIGDGANDVSMIQMADVGVGICGQEGRQAVMASDFAMGQFQFLKKLLLVHGHWNYQRIGYLVLYNFYRNAVFVLMLFWYISCTAFSTTSALTDWSSVLYSVIYTSIPTVIVGVLDKDLSHRTLLQYPKLYGAGHRHEAYNMQLFWITMLDTLWQSLVLFYIPVFTYKDSTLDIWSMGSLWTISVVILVNVHLAMDINQWALVNHVAVWGSIVITYGCVVILDSIPVFPNYGTIYHLARSPTYWMTILFIIILALLPRFFCKAKLENLIGTVSLYLSITLHSRGSWLYKWPGE 1169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01660 1169 SUPERFAMILY Calcium ATPase, transduction domain A 137 278 IPR008250 -
Cca01g01660 1169 Gene3D - 110 282 - -
Cca01g01660 1169 SFLD p-type atpase 410 930 IPR044492 -
Cca01g01660 1169 ProSitePatterns E1-E2 ATPases phosphorylation site. 428 434 IPR018303 -
Cca01g01660 1169 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 432 707 IPR023299 GO:0000166
Cca01g01660 1169 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 35 1139 - -
Cca01g01660 1169 MobiDBLite consensus disorder prediction 781 795 - -
Cca01g01660 1169 Gene3D - 535 670 IPR023299 GO:0000166
Cca01g01660 1169 SUPERFAMILY Calcium ATPase, transmembrane domain M 53 1138 IPR023298 -
Cca01g01660 1169 Pfam E1-E2 ATPase 138 384 - -
Cca01g01660 1169 Pfam Phospholipid-translocating P-type ATPase C-terminal 907 1139 IPR032630 -
Cca01g01660 1169 SFLD C1.7: P-type atpase like 410 930 - -
Cca01g01660 1169 TIGRFAM ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase 53 1139 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016021|GO:0140326
Cca01g01660 1169 Pfam Cation transport ATPase (P-type) 534 616 - -
Cca01g01660 1169 PRINTS P-type cation-transporting ATPase superfamily signature 426 440 - -
Cca01g01660 1169 PRINTS P-type cation-transporting ATPase superfamily signature 879 898 - -
Cca01g01660 1169 SUPERFAMILY HAD-like 413 923 IPR036412 -
Cca01g01660 1169 CDD P-type_ATPase_APLT_Dnf-like 55 1039 - -
Cca01g01660 1169 MobiDBLite consensus disorder prediction 774 807 - -
Cca01g01660 1169 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 35 1139 - -
Cca01g01660 1169 Pfam Phospholipid-translocating ATPase N-terminal 39 104 IPR032631 -
Cca01g01660 1169 Gene3D - 692 919 IPR023214 -
Cca01g01660 1169 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 849 965 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cca01g01660 1169 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 359 449 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01660 Cca-Chr1 38358335 38365752 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01660 33 1142 Primary Pumps ATPases AT5G04930 55.896 0.0 1276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01660 K14802 - gmx:100788740 2049.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g01766 07 43971902 43979317 Cca01g01660 01 38358335 38365752 PCT