Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01657 ATGGATGACAGAAGGGTATTCCAAGAGCTTGTGAGAGGGCGTGAGTTTGCAAATCAACTTCGTCAAGTGATGAATGAACATGATAACTCATCTTCTAATTTACTCCAAACTCTTGCCAAGAACGTGCTTAGATCCTTCACCAACACCCTCTTCCTCTTTGACAAATACCCCACCTACGAATCCCATGAGCTTTCCCAGATTCAACAACAACACTCTCAAGAAAGTTGCAAGAGGGTCACCCCTAAGAACAGAAGAGGCTGCTACAAGAGAAAAAGAACTACAGAAGAATGGGAGAGGGTGTCGGAAACTCCAATAGTTGATGGTCACCAGTGGAGAAAGTATGGCCAAAAAGCGATCCTCGAAGCCAAATACTCAAGGAACTATTACAGGTGCAGTCACAGGTATGATCAGAAATGTCAAGCATCAAAACAAGTGCAAAGAATTCAAGAGGAGCCTCCCTTGTATAAGACCACCTATTTTGGCCACCACACGTGCAATAATGAGTTGATAAAGATAAACTCCAAAATCATACTTGATTCCAATAGTTCTGCTCCTGACACTTCCATATTGCTTAGCTTTAACAACACCATCCCTAATCCAACCAATCAAGAGTGCCCTTTTTTATCATCTTTTCATCCCTCACCATCACTCAACAAAGAGGAGGTAATTCCCTCACCTTCCTCAAATGATTACTTCCTCTCCCCAAAACCCACCTCAGATAATTCTTCAATGCATGACACTAACGATGTCACTCTATCACCTCATCACTGGGATGCCATATCCACTTTCTGTGATTCGGTTGACCTTGATGATGCCTATCACCCTTTTGGTGGACTTTGA 840 0.4274 MDDRRVFQELVRGREFANQLRQVMNEHDNSSSNLLQTLAKNVLRSFTNTLFLFDKYPTYESHELSQIQQQHSQESCKRVTPKNRRGCYKRKRTTEEWERVSETPIVDGHQWRKYGQKAILEAKYSRNYYRCSHRYDQKCQASKQVQRIQEEPPLYKTTYFGHHTCNNELIKINSKIILDSNSSAPDTSILLSFNNTIPNPTNQECPFLSSFHPSPSLNKEEVIPSPSSNDYFLSPKPTSDNSSMHDTNDVTLSPHHWDAISTFCDSVDLDDAYHPFGGL 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01657 279 ProSiteProfiles WRKY domain profile. 100 168 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca01g01657 279 SUPERFAMILY WRKY DNA-binding domain 101 166 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca01g01657 279 MobiDBLite consensus disorder prediction 218 247 - -
Cca01g01657 279 Gene3D WRKY domain 90 167 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca01g01657 279 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 1 272 - -
Cca01g01657 279 SMART WRKY_cls 105 167 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca01g01657 279 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 1 272 IPR044810 GO:0003700
Cca01g01657 279 Pfam WRKY DNA -binding domain 107 166 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01657 Cca-Chr1 38315473 38317327 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01657 5 166 WRKY Transcription Factor Family AT3G56400 37.500 1.03e-36 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Cca01g01657 WRKY 3.8e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01657 - - gmx:102670495 325.094
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g01765 07 43965085 43967529 Cca01g01657 01 38315473 38317327 PCT