Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01656 ATGTCTATTTTTTTCAAGTATTTTGCTATTACACCTGGTGCTCCTGGTCTTGGCCAACAGTTTTTGTATGGGCAAGGACCCCCTGCTATGATGCCTCCACAAGCTGGATTTGGTTACCAGCAGCAACTAGTTCCTGGAATGAGACCTGGTGGTGCTCCCATTCCAAGCTTCTTTGTTCCTATGGTTCAGCAGGGCCAACAAGGGCAGCGCCCAGGGGGACGTCGAGGAGCGGGTCCTGTACAACAACCCCAGCAGCTAGTGCCTATGATGCAGCAGCAGATGCTTCCAAGGGGACGTGTCTACCGTTACCCACCTGGCCGCAACATGCAAGATGCCCCTCTTCCAGTAGCTGCTGGTGGAATGCTGTCAATCCCATATGACATGGGTGGTATGCCAATGCCCATTCAAGCTTTGCCTACAGCTCTCGCTAATGCCCCACCTGAACAGCAGAGGACTATGCTTGGCAAAGCGTTATACCCGCTTGTGGATCAGCTGGAACATGATGCAGCAGCAAAGGTTACATGCATGCTTTTGGAGATGGACCAGATGCTCTGA 555 0.5225 MSIFFKYFAITPGAPGLGQQFLYGQGPPAMMPPQAGFGYQQQLVPGMRPGGAPIPSFFVPMVQQGQQGQRPGGRRGAGPVQQPQQLVPMMQQQMLPRGRVYRYPPGRNMQDAPLPVAAGGMLSIPYDMGGMPMPIQALPTALANAPPEQQRTMLGKALYPLVDQLEHDAAAKVTCMLLEMDQML 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01656 184 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 134 184 IPR002004 GO:0003723
Cca01g01656 184 SMART poly_2 146 184 IPR002004 GO:0003723
Cca01g01656 184 Gene3D - 129 183 - -
Cca01g01656 184 SUPERFAMILY PABC (PABP) domain 86 182 IPR036053 GO:0003723
Cca01g01656 184 PANTHER POLYADENYLATE-BINDING PROTEIN 11 182 - -
Cca01g01656 184 Pfam Poly-adenylate binding protein, unique domain 142 182 IPR002004 GO:0003723
Cca01g01656 184 PANTHER RNA BINDING PROTEIN 11 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01656 Cca-Chr1 38308085 38309106 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01656 10 182 Eukaryotic Initiation Factors Gene Family AT2G23350 62.431 1.08e-54 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01656 K13126 - gmx:100811385 269.626