Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01652 ATGCGAATGGCCTCATCAACACTACTCCTACTTCCTCTTCTCTTCTCCTTAATCCTCCAAAATCCTCACCACTCCTTTTCCTTCTCACTCTCCGTCGAGAATCCCCAAGACGTGATTCTCTCGTCTCCCGAACCCACATTCACCGCAGCGTTCCACCCCGTCGGGGAAAACGCCTTCTGCTTCGCCATACGCTACACGCGCCCGCCCCACACCCTCGTCTGGATCGCCAACCGGGACCACCCGGTAAACGGTAGACGCTCCACCCTCTCTCTCTCCAAGACCGGCAACCTCGTCCTCACCGACGCCGCCCAGTTCCAAGTGTGGTCCACCAACACCGCCGCCGCATCCAGACAGGTGAAGCTTCACCTGCACGACACCGGCAACCTCGTACTCCTCGACCACGGCGACGGAGGAAAGATTAAGATTCTCTGGCAGAGCTTCGACTTCCCCACGGACACGCTCCTCCCGAACCAGCCTCTGAGCAAGAGCACCGCGCTGGTTTCGTCGAGAAGCGGGTCGAACTACTCCTCCGGCTACTACAAGCTCTTCTTCGACTTCGAGAATGTTCTGCGCCTCATGTACCAGGGCCCTCGCGTTTCCAGCGTCTACTGGCCCTACGCCTGGCTCCAGAACAACAACTTCGGCCTCGTCGGGAACGGCAGATCCACCTACAACGACACTAGGGTTGTGCTGCTCGATTCCTTCGGCCACGTCGTTTCTTCTGACAACTTCACCATCACAACCGCTGATTGCGGGACGCTGCTTCGGCGGCGGTTGACGCTCGATCACGACGGCAATGTTCGCGTCTATAGCTTGAGAGAGGGGGAGGAGAAGTGGTCCGTGTCGGCGCAGTTTCGCTCGCAGCCTTGTTTCATTCACGGGATTTGTGGACCCAATAGTTATTGCAGCGCTCGCCCAAATTCGGAGAGAAAGTGTTCGTGCCTTCCAGGATATAGATGGGTTGATAGTCAAGACTGGTCTCAAGGTTGTGTATCGAAATTCCAGCTTTGGTGCAACGACACTCAGCAAGAGTCTCGCTTCCTGCGCTTACCCGAATTTGATTTTTATGGATATGACTATGGCTACTTTCCAAATCACACATACGAACAATGCGAGAATTTGTGTTTGGGTTTATGTGAATGCAAAGGGTTTTCACACAGCTTTTCGGGGCAAAGTGACAGCACTAGTCAGTGCTACCTGAAGAGACAGTTGCTAAATGGGCATCATTCACCGGGTTTCACAGGAGCATTCCTCCTGCGACTGCCTTTGTCCCATGACTATGAGAACCACATCGAGAATGGCTTGGTTTGTGAGGCAAACAATGGAGGAGCAGAAGTACTAGAGAGGCCGTACGTGGAAGAAAAAGAAAATGGGTCGGTGAAGTTCATGCTGTGGTTTGCGAGTGGCTTGGGAGGAATTGAGGTCGTGTGCATCTTTCTGGTGTGGTGTTTCTTGTTTAGGAATAATGCTGATAAACAAGGCTATGTTCTTGCAGCAGAAACGGGGTTTAGGAAATTCAGTTACTCTGAACTGAAAAAAGCCACCAAAGGTTTCAGCGAAGAGATTGGAAGGGGTGCCGGAGGTACTGTGTATAAGGGTGTGTTGTCAGATAATCGAGTTGTGGCAATAAAGCGACTACATGAAGTAGTGAACCAAGGACAAAGTGAGTTCCTGGCTGAAGTAAGCATCATTGGAAGGCTTAACCACATGAACTTAATTGGCATGTTGGGTTATTGTGCAGAGGGAAAGTATAGGTTGTTGGTTTATGAGTACATGGAGAATGGTTCTTTAGCTCAGAACCTCTCATCGAATGCAAATGTACTTGACTGGAAAAGGAGGTATGAAATTGCTCTTGGAACAGCAAGGGGTCTGGCCTACTTGCATGAAGAATGCTTGGAGTGGATTTTGCATTGTGATATTAAGCCCCAAAATATACTTCTTGACTCCGAGTACCAGCCCAAGGTAGCTGATTTTGGTTTGTCTAAACTACTTAACCGGAACAACCTCGACAATTCAACCTTCTCAAGGATAAGAGGAACAAGAGGTTACATGGCACCAGAGTGGGTTTTTAACTTGCCAATCACTTCCAAGGTGGATGTTTACAGCTATGGAATTGTTATCTTGGAGATGATAACTGGAAGGAGCCCAACAACAGGTGTCCAAATCACAGAATTAGAAGCAGACTCACCTCATCATGAGAGGTTGGTGACATGGGTGAGGGAGAAAAGGAGAAAAGGATCAGAAGTGGGATCATCTTGGGTGGGTCAAATTATTGACCCTGCTTTGAGATCAAACTATGACGTGAATGAAATGGAGATTTTAGCTACAGTGGCTTTGGATTGTGTAGAGGAAGAGAAAGATGCAAGACCCAGCATGAGTCAAGTTGTTGAGAGGCTTCAAAGTCATGAACATGCTTCTTGA 2421 0.4944 MRMASSTLLLLPLLFSLILQNPHHSFSFSLSVENPQDVILSSPEPTFTAAFHPVGENAFCFAIRYTRPPHTLVWIANRDHPVNGRRSTLSLSKTGNLVLTDAAQFQVWSTNTAAASRQVKLHLHDTGNLVLLDHGDGGKIKILWQSFDFPTDTLLPNQPLSKSTALVSSRSGSNYSSGYYKLFFDFENVLRLMYQGPRVSSVYWPYAWLQNNNFGLVGNGRSTYNDTRVVLLDSFGHVVSSDNFTITTADCGTLLRRRLTLDHDGNVRVYSLREGEEKWSVSAQFRSQPCFIHGICGPNSYCSARPNSERKCSCLPGYRWVDSQDWSQGCVSKFQLWCNDTQQESRFLRLPEFDFYGYDYGYFPNHTYEQCENLCLGLCECKGFSHSFSGQSDSTSQCYLKRQLLNGHHSPGFTGAFLLRLPLSHDYENHIENGLVCEANNGGAEVLERPYVEEKENGSVKFMLWFASGLGGIEVVCIFLVWCFLFRNNADKQGYVLAAETGFRKFSYSELKKATKGFSEEIGRGAGGTVYKGVLSDNRVVAIKRLHEVVNQGQSEFLAEVSIIGRLNHMNLIGMLGYCAEGKYRLLVYEYMENGSLAQNLSSNANVLDWKRRYEIALGTARGLAYLHEECLEWILHCDIKPQNILLDSEYQPKVADFGLSKLLNRNNLDNSTFSRIRGTRGYMAPEWVFNLPITSKVDVYSYGIVILEMITGRSPTTGVQITELEADSPHHERLVTWVREKRRKGSEVGSSWVGQIIDPALRSNYDVNEMEILATVALDCVEEEKDARPSMSQVVERLQSHEHAS 806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01652 806 Gene3D Transferase(Phosphotransferase) domain 1 592 806 - -
Cca01g01652 806 SUPERFAMILY Protein kinase-like (PK-like) 497 799 IPR011009 -
Cca01g01652 806 Pfam D-mannose binding lectin 71 162 IPR001480 -
Cca01g01652 806 ProSitePatterns Protein kinases ATP-binding region signature. 522 544 IPR017441 GO:0005524
Cca01g01652 806 Gene3D Hepatocyte Growth Factor 349 417 - -
Cca01g01652 806 ProSitePatterns Serine/Threonine protein kinases active-site signature. 635 647 IPR008271 GO:0004672|GO:0006468
Cca01g01652 806 Pfam Protein kinase domain 519 797 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g01652 806 CDD STKc_IRAK 522 800 - -
Cca01g01652 806 ProSiteProfiles PAN/Apple domain profile. 338 422 IPR003609 -
Cca01g01652 806 ProSiteProfiles Bulb-type lectin domain profile. 23 144 IPR001480 -
Cca01g01652 806 CDD PAN_AP_plant 334 422 - -
Cca01g01652 806 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 9 805 - -
Cca01g01652 806 ProSiteProfiles Protein kinase domain profile. 516 805 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g01652 806 Gene3D Phosphorylase Kinase; domain 1 484 591 - -
Cca01g01652 806 CDD B_lectin 39 150 IPR001480 -
Cca01g01652 806 Gene3D - 33 148 IPR036426 -
Cca01g01652 806 SMART serkin_6 516 805 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g01652 806 PIRSF SRK 1 806 IPR024171 GO:0004674
Cca01g01652 806 PANTHER SERINE/THREONINE KINASE, PLANT-TYPE PROTEIN 9 805 - -
Cca01g01652 806 SMART blect_4 31 150 IPR001480 -
Cca01g01652 806 Pfam S-locus glycoprotein domain 252 319 IPR000858 GO:0048544
Cca01g01652 806 SUPERFAMILY alpha-D-mannose-specific plant lectins 72 168 IPR036426 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01652 Cca-Chr1 38204271 38207924 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01652 506 806 Trihelix Transcription Factor Family AT5G38560 43.421 4.64e-70 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Cca01g01652 Pkinase 9.4e-54 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01652 - - gmx:100808408 1342.02