Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01641 ATGGAGTTTGGAGATAACAACATGTTGGGTCTTAACAACCACACCAAAGAGGGAAATGGAAACACTAATATCAACAATAACACTTTTGTTAATGTTTGGTATTCATCATGGGAACCTACTATGCCCACTTCTTCAAATTCTACCCTTATTAATAATACGCTACACGCCGCCGCCGTGGCGGGGGGGGGGGGCGCCAGCAGCAGCTGTACGGGGGCGAGGGGTGTCACGTGCAGGCGGACCCTCATCTCACGTGCTTGCATCTTGGCAAGAGACATTACCTGGAGGATGATGGTGGGGTTGGTGCTACCCCTCTGGGGAACCGACACGTGTGCGGCGGTGGAGGGGGTTTTGCGTTGGAGGGTTGAGGGGTGCCACGTGGCGCTGGTGAACGCGAAGGAGTACCATAGAAGGCACAGAGTTTGTGATATGCATTCCAAGGCGCCCAAAGTTGTGGTGTTAGGATTGGAGCAGAGATTCTGTCAGCAGTGTAGCAGGTTTCATGTGGTATCAGAGTTTGACGATGCTAAGAGGAGTTGCAGGAGGAGACTGGCGGGTCATAACGAGCGAAGAAGAAAGAGCTCTCACCTTTCTGTTACTAGGAATTCGAGACAAGGGTGTGCTCTCTCTCTTCTGTCATCATCTGGGAGTGAGTCTTGGCTTGCTCATGCTGATCTCTCCACAAGATGCAGCGCAGCATTGCGTGAACTGATAGCAGAAAACCGTGCCACTGCCCTAATGACTAGACAAGTTTATGATAGACACTGCCATGCCATGCCCCACCATGCAATAGTGGAAGAACAAGACTTCCAGCAGATACAACCTGAGTCCAATTATTTTCCACAACACATGTTTCCCCAGACACAATAA 867 0.5052 MEFGDNNMLGLNNHTKEGNGNTNINNNTFVNVWYSSWEPTMPTSSNSTLINNTLHAAAVAGGGGASSSCTGARGVTCRRTLISRACILARDITWRMMVGLVLPLWGTDTCAAVEGVLRWRVEGCHVALVNAKEYHRRHRVCDMHSKAPKVVVLGLEQRFCQQCSRFHVVSEFDDAKRSCRRRLAGHNERRRKSSHLSVTRNSRQGCALSLLSSSGSESWLAHADLSTRCSAALRELIAENRATALMTRQVYDRHCHAMPHHAIVEEQDFQQIQPESNYFPQHMFPQTQ 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01641 288 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 7 110 282 - -
Cca01g01641 288 SUPERFAMILY SBT domain 120 195 IPR036893 GO:0003677|GO:0005634
Cca01g01641 288 Pfam SBP domain 120 192 IPR004333 GO:0003677
Cca01g01641 288 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 110 282 IPR044817 GO:0003677
Cca01g01641 288 Gene3D - 113 180 IPR036893 GO:0003677|GO:0005634
Cca01g01641 288 ProSiteProfiles Zinc finger SBP-type profile. 116 193 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01641 Cca-Chr1 37753092 37757221 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01641 121 194 SBP-box Gene Family AT2G33810 70.270 1.14e-33 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Cca01g01641 SBP 2e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01641 - - gmx:100780159 306.99