Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01638 ATGTTGGACTACGAATGGGGGAACCCCTCTCCGATAATGCTCACCGGAAACGAGGACAACGCCGCCGCGGCCTCCGACCAAGCCCCCCGCCAAATCTTCGACCACTACGCCTCCCACACGCTCATCCCCGaccacttcctccacgcgccaacgcactcctccgccaccaccgccgccgccgccaccgtggatttcacccaccaccaccaccacttcaacccccagccccatcacaaccacatgaacaaccaccaccacGCCTTCTTCGACCCACGCGCCTTCCACAGCGCGTCCCCCGCCTCCTACCCCCCACCCCCCTCCATGCTCTCCCTTGACCCGCTCCCCCACGTCAACTGcgggcctgggccgggtcacggacctggcccaggccccggcctcctcctcgtcccAAAGTCCGAGGATATCAACCGTCCTATGGACTTTGTCGGCTCACGAATTGGACTCAATCTCGGAGGGCGCACTTATTTCTCGTCCTCCGAGGATGACTTCGTGAACCGACTTTACCGTCGGTCTCGCCCCGCAGAGCAGGGTTCGACGGCCTCGTCGAACTCGCCGCGTTGCCAGGCCGAGGGATGCAATGCTGATCTGTCCCAGGCCAAGCACTACCACCGCCGCCACAAGGTGTGCGAGTTTCACTCCAAAGCTGCCACGGTCATCGCCGCCGGGTTGACTCAGCGATTCTGCCAGCAATGCAGCAGGTTGCGGTCGTTCTCAGTTCCCACCGTCGGAAATTCGTCAATCATTGAGTTCCACTTCCCCAGGGGCATTTCCGTCTTTCCCCACACCTACCTTTGCTTCTTGCAGTAG 828 0.4722 MLDYEWGNPSPIMLTGNEDNAAAASDQAPRQIFDHYASHTLIPDHFLHAPTHSSATTAAAATVDFTHHHHHFNPQPHHNHMNNHHHAFFDPRAFHSASPASYPPPPSMLSLDPLPHVNCGPGPGHGPGPGPGLLLVPKSEDINRPMDFVGSRIGLNLGGRTYFSSSEDDFVNRLYRRSRPAEQGSTASSNSPRCQAEGCNADLSQAKHYHRRHKVCEFHSKAATVIAAGLTQRFCQQCSRLRSFSVPTVGNSSIIEFHFPRGISVFPHTYLCFLQ 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01638 275 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 64 241 IPR044817 GO:0003677
Cca01g01638 275 Gene3D - 184 258 IPR036893 GO:0003677|GO:0005634
Cca01g01638 275 ProSiteProfiles Zinc finger SBP-type profile. 191 265 IPR004333 GO:0003677
Cca01g01638 275 SUPERFAMILY SBT domain 192 244 IPR036893 GO:0003677|GO:0005634
Cca01g01638 275 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 10 64 241 - -
Cca01g01638 275 Pfam SBP domain 194 243 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01638 Cca-Chr1 37605490 37608286 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01638 1 241 SBP-box Gene Family AT1G02065 42.353 5.42e-59 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Cca01g01638 SBP 5.5e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01638 - - vun:114181599 342.428
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g01638 01 37605490 37608286 Cca01g01638 01 37605490 37608286 ECH