Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01630 ATGAAAAAATGTATCAATATGGAAAGTGATGCTaactacaacaccaacaccaacaccaacaacaacaTCTTTGCCACATCTTCCTCCTCTTCCACCACCACAACCCCTTCAACCATCACAGACCCAAACACTTGTACCTCAACATCTTCCACCTCAAATTCAGATTCATGCaccaaagccaaaaccaaaaccaaaaccaaaaccCCTCAAAATGACTCAACCACTTCTGAAGGCTCATTGGAGAATGGAAAGGACTCAAAGGGGTGCAAGAAGAGGCAGAGGGAGAACAACAACCACCCTACTTATAGGGGTGTGAGGATGAGAAACTGGGGAAAATGGGTGTCTGAAATCAGGGAACCAAGAAAGAAGTCAAGAATATGGCTAGGAACATACCCTACAGCAGAAATGGCAGCTAGGGCACATGATGTGGCTGCACTAGCCATCAAGGGCCACTCAGCATACCTCAATTTCCCAGAACTGGCTCAGCAACTTCCAAGGCCACAAAGCACTTCACCTAAGGACATTCAAGCTGCAGCTGCAAAAGCAGCAAACACTGCCTTTCAACAACAAGTGCTCCATCATTGTGATgaagaagaagaagaagaagaagaagcagaaCCATGCCAAGCAGAACAAGCCTCTTCTTCATCTCTCTCAATGGACAATCATAACACTCTAGAGGCTTCAAGCTCTCCCTCTACCAATCATGATGATGATACCTTGTTTGACCTTCCAGATCTTTTCCCTCATGATGGACTTTGCTCCTATTCTTCTTCTTGGCATTTGTGTGCAGTTGATAGTGGCTTTAGGCTTGAAGAGTCTTTTTTTTGGGAGAATTATTAG 843 0.3986 MKKCINMESDANYNTNTNTNNNIFATSSSSSTTTTPSTITDPNTCTSTSSTSNSDSCTKAKTKTKTKTPQNDSTTSEGSLENGKDSKGCKKRQRENNNHPTYRGVRMRNWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAALAIKGHSAYLNFPELAQQLPRPQSTSPKDIQAAAAKAANTAFQQQVLHHCDEEEEEEEEAEPCQAEQASSSSLSMDNHNTLEASSSPSTNHDDDTLFDLPDLFPHDGLCSYSSSWHLCAVDSGFRLEESFFWENY 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01630 280 MobiDBLite consensus disorder prediction 83 101 - -
Cca01g01630 280 MobiDBLite consensus disorder prediction 209 237 - -
Cca01g01630 280 Pfam AP2 domain 100 151 IPR001471 GO:0003700|GO:0006355
Cca01g01630 280 CDD AP2 102 160 IPR001471 GO:0003700|GO:0006355
Cca01g01630 280 PRINTS Ethylene responsive element binding protein signature 102 113 IPR001471 GO:0003700|GO:0006355
Cca01g01630 280 PRINTS Ethylene responsive element binding protein signature 124 140 IPR001471 GO:0003700|GO:0006355
Cca01g01630 280 MobiDBLite consensus disorder prediction 26 103 - -
Cca01g01630 280 MobiDBLite consensus disorder prediction 194 237 - -
Cca01g01630 280 PIRSF PTI6 10 207 IPR017392 GO:0003700
Cca01g01630 280 PIRSF PTI6 173 274 IPR017392 GO:0003700
Cca01g01630 280 SMART rav1_2 101 164 IPR001471 GO:0003700|GO:0006355
Cca01g01630 280 ProSiteProfiles AP2/ERF domain profile. 101 158 IPR001471 GO:0003700|GO:0006355
Cca01g01630 280 SUPERFAMILY DNA-binding domain 101 159 IPR016177 GO:0003677
Cca01g01630 280 MobiDBLite consensus disorder prediction 26 59 - -
Cca01g01630 280 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 18 280 - -
Cca01g01630 280 MobiDBLite consensus disorder prediction 67 82 - -
Cca01g01630 280 PANTHER ETHYLENE RESPONSE FACTOR 18 280 - -
Cca01g01630 280 Gene3D AP2/ERF domain 101 159 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01630 Cca-Chr1 37271367 37272242 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01630 91 276 AP2-EREBP Transcription Factor Family AT2G44940 57.488 9.65e-70 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Cca01g01630 AP2 3.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01630 - - gmx:100776436 334.339
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g01630 01 37271367 37272242 Cca01g01630 01 37271367 37272242 ECH