Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01629 ATGTTTGGGCGTGGTGGACCGAGGAGGAGTGATAACTCCAAATATTATGATATTCTTGGGGTTTCAAAAAATGCCAGTGAAGATGAAATCAAGAAGGCTTACAGGAAGGCAGCTATGAAGAATCATCCAGATAAGGGTGGAGATCCTGAAAAATTTAAGGAGTTAGGTCAAGCTTATGAAGTTTTAAGTGATCCTGAGAAGAAAGAACTGTATGACCAATATGGTGAAGATGCCCTTAAAGAAGGGATGGGTGGAGGAGGAAGCTCATTTCATAATCCATTTGATATATTTGAATCATTTTTTGGAGGACCTAGCTTTGGTGGTGGTAGTAGTTCTCGAGGTAGAAGACAGAAGCATGGTGAAGATGTGGTGCATTCTTTAAAGGTTTCTTTGGAGGATGTCTATAATGGCACAATGAAGAAACTATCTCTTTCTAGAAACGTGTTATGCTCAAAATGTAAAGGGAAAGGTTCAAAAAGTGGAACAGCTGGAAGGTGTTTTGGGTGCCAAGGGACTGGTATGAAGGTTACAAGAAGGCAGATTGGACTAGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGAACTGGTGAGGTCATTAGCGAGAGGGATAGATGTCCTCAGTGCAAAGGAAACAAGGTTAGCCAGGAAAGGAAGGTTCTGGAGGTGCATGTTGATAAGGGGATGCAGCAGGGTCAGAAAATTGTTTTTGAAGGACAAGCTGATGAAGCTCCTGACACAATTACAGGAGACATTGTTTTTGTGTTACAAGTTAAAGATCACCCAAAGTTCAGGAGGGAGCATGATGACCTCTTTATTGATCACACTCTCAACTTAACTGAGGCACTCTGTGGCTTCCAGTTTGCTGTCACACATCTTGATGGTAGGCAGCTATTGATCAAATCAAACCCTGGAGAAGTCATCAAGCCAGGTCAATACAAAGCTATAAATGATGAAGGAATGCCCCAACACAACAGGCCATTCATGAAGGGTCGCCTTTACATCCAGTTCAATGTTGATTTCCCTGACTCGGGGTCCCTTTCCCCCGAGCAATGCCAGTTATTGGAAAAGGTATTACCTCAGAAGGTCAGCAAGCAAATGTCAGATATGGAGCTGGATGATTGTGAGGAGACCACTTTGCATGATGTTAACATTAAGGAGGAGATGAAACGAAAGCAGCAGCAACAGTATCGTGAGGCATATGATGAAGAGGATGATGAGCCATCTGGTCCTCGAGTTCAATGTGCTCAACAGTAG 1266 0.4313 MFGRGGPRRSDNSKYYDILGVSKNASEDEIKKAYRKAAMKNHPDKGGDPEKFKELGQAYEVLSDPEKKELYDQYGEDALKEGMGGGGSSFHNPFDIFESFFGGPSFGGGSSSRGRRQKHGEDVVHSLKVSLEDVYNGTMKKLSLSRNVLCSKCKGKGSKSGTAGRCFGCQGTGMKVTRRQIGLGMIQQMQHVCPDCRGTGEVISERDRCPQCKGNKVSQERKVLEVHVDKGMQQGQKIVFEGQADEAPDTITGDIVFVLQVKDHPKFRREHDDLFIDHTLNLTEALCGFQFAVTHLDGRQLLIKSNPGEVIKPGQYKAINDEGMPQHNRPFMKGRLYIQFNVDFPDSGSLSPEQCQLLEKVLPQKVSKQMSDMELDDCEETTLHDVNIKEEMKRKQQQQYREAYDEEDDEPSGPRVQCAQQ 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01629 421 PANTHER CHAPERONE PROTEIN DNAJ A6 8 421 - -
Cca01g01629 421 ProSiteProfiles Zinc finger CR-type profile. 137 221 IPR001305 GO:0031072|GO:0051082
Cca01g01629 421 Pfam DnaJ domain 14 72 IPR001623 -
Cca01g01629 421 PANTHER DNAJ-LIKE-2, ISOFORM A-RELATED 8 421 IPR044713 GO:0006457|GO:0030544
Cca01g01629 421 Gene3D DnaJ domain 11 111 IPR036869 -
Cca01g01629 421 SUPERFAMILY Chaperone J-domain 10 109 IPR036869 -
Cca01g01629 421 ProSitePatterns Nt-dnaJ domain signature. 52 71 IPR018253 -
Cca01g01629 421 SUPERFAMILY HSP40/DnaJ peptide-binding domain 121 265 IPR008971 GO:0006457|GO:0051082
Cca01g01629 421 SUPERFAMILY HSP40/DnaJ peptide-binding domain 267 354 IPR008971 GO:0006457|GO:0051082
Cca01g01629 421 Pfam DnaJ C terminal domain 124 345 IPR002939 -
Cca01g01629 421 PRINTS DnaJ domain signature 16 34 IPR001623 -
Cca01g01629 421 PRINTS DnaJ domain signature 47 67 IPR001623 -
Cca01g01629 421 PRINTS DnaJ domain signature 67 86 IPR001623 -
Cca01g01629 421 MobiDBLite consensus disorder prediction 389 413 - -
Cca01g01629 421 Hamap Chaperone protein DnaJ [dnaJ]. 11 373 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Cca01g01629 421 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 147 218 IPR036410 -
Cca01g01629 421 Gene3D - 264 346 - -
Cca01g01629 421 CDD DnaJ_C 121 347 - -
Cca01g01629 421 SMART dnaj_3 13 67 IPR001623 -
Cca01g01629 421 Gene3D - 112 262 - -
Cca01g01629 421 ProSiteProfiles dnaJ domain profile. 14 75 IPR001623 -
Cca01g01629 421 MobiDBLite consensus disorder prediction 389 421 - -
Cca01g01629 421 CDD DnaJ_zf 150 216 IPR001305 GO:0031072|GO:0051082
Cca01g01629 421 Gene3D - 150 216 - -
Cca01g01629 421 CDD DnaJ 15 64 IPR001623 -
Cca01g01629 421 Pfam DnaJ central domain 150 216 IPR001305 GO:0031072|GO:0051082
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01629 Cca-Chr1 37228251 37233644 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01629 9 74 C2H2 Transcription Factor Family AT1G74250 44.000 4.28e-11 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01629 K09503 - gmx:100800590 774.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g01629 01 37228251 37233644 Cca01g01629 01 37228251 37233644 ECH