Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01616 ATGCACGGGAAAAAAGAGCAAGAAGAAGAGTATATAAGGAAAGGTCCATGGAAAGCTGAAGAAGATGAGGTGCTACTGAACCACGTGAAGAAGTATGGCCCCAGAGATTGGAGCTCCATTCGATCCAAAGGCCTTCTTCAAAGAACTGGCAAGTCGTGTCGTCTTCGTTGGGTCAATAAGCTTCGACCAAACCTTAAGAATGGTTGCAAGTTTTCACTAGAAGAAGAGAGGGTTGTGATAGAGTTGCAGGCACAATTTGGGAACAGGTGGGCTAAGATTGCAACTTATTTGACAGGGAGAACAGACAATGATGTTAAAAATTTCTGGAGCAGTAGGCAAAAGAGGTTGGCTAGGATTCTGCAGACATCAGCAACAAAATCGCAGAAAAACAAAACTAAAGTTCCTACCTCTGTTGATGTTCCAACTTTGGAGGCTCCTAAGTTCAGTTCATCATCAGAGGGAGAACCATCGTCAAAGCCTCATTCATGCTCACTACCCTTCTTCGAGAATTCCGAGGTTATCAAAATGGTGTCATTGCCAGATCTAATAAAGCCCGAGTTGCCTAGTTCTCACACAACCCAATTTGAACAAGAGTTCACCCTTTTCGATAGCTACGAAAACACTGAACAGAATCAGCACGTTGCCTTTCCTCAGATTCCAGAACTGCACAATGATCTCGCATTCTCAATGGATGAGCCATGTTTCATTGAAGACTTTGGTCCCCTTGATGCATCTGAGTTTGGAACTTTCTTTGAGTCACCAGGAAGCTGCAGAATAGGGACGAGGGACACGGTTGATAACTCCAGAAACAGTGACAGCTTCTTCGATGATTTTCCTGTGGACATGTTTGATCATATGGACCCAACTGAGAGCCCTTCTAATCTCTGA 888 0.4403 MHGKKEQEEEYIRKGPWKAEEDEVLLNHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNGCKFSLEEERVVIELQAQFGNRWAKIATYLTGRTDNDVKNFWSSRQKRLARILQTSATKSQKNKTKVPTSVDVPTLEAPKFSSSSEGEPSSKPHSCSLPFFENSEVIKMVSLPDLIKPELPSSHTTQFEQEFTLFDSYENTEQNQHVAFPQIPELHNDLAFSMDEPCFIEDFGPLDASEFGTFFESPGSCRIGTRDTVDNSRNSDSFFDDFPVDMFDHMDPTESPSNL 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01616 295 Gene3D - 14 66 - -
Cca01g01616 295 CDD SANT 16 61 IPR001005 -
Cca01g01616 295 CDD SANT 70 109 IPR001005 -
Cca01g01616 295 Gene3D - 69 138 - -
Cca01g01616 295 ProSiteProfiles Myb-like domain profile. 70 113 IPR001005 -
Cca01g01616 295 PANTHER TRANSCRIPTION FACTOR DUO1 1 294 - -
Cca01g01616 295 MobiDBLite consensus disorder prediction 122 162 - -
Cca01g01616 295 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 65 IPR017930 -
Cca01g01616 295 PANTHER TRANSCRIPTION FACTOR DUO1 1 294 - -
Cca01g01616 295 SMART sant 13 63 IPR001005 -
Cca01g01616 295 SMART sant 67 115 IPR001005 -
Cca01g01616 295 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 117 IPR017930 -
Cca01g01616 295 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Cca01g01616 295 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Cca01g01616 295 Pfam Myb-like DNA-binding domain 17 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01616 Cca-Chr1 36992282 36994697 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01616 4 292 MYB Transcription Factor Family AT3G60460 51.140 7.71e-85 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca01g01616 Myb_DNA-bind_6 5.7e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01616 K09422 - gmx:100805384 473.781
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g01616 01 36992282 36994697 Cca01g01616 01 36992282 36994697 ECH