Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01603 ATGTTCCTCCACCACCGCCATGTCTCAAAGCTCTCAAATATCCCATGGAAGTACAAGAAATTCGCCATAAGCCAAGGCCAGAAGGCCCTCACCGATTACCTCCACGCCACGCGCTGCATCCCTTACGCCTACGCTGACCAAATCGCCAAGAACTCCCTCACTGCTCTCACCAACCTCATCACCAAGTTGGGCTCTTTCTCTGCCCCCCACTTCCCCCACAACCTCAACAAGTTCCTACGCTACAACCCCATCAACGAATTCGAGTTTTTCTTCGAGAGCATCGGCATTCAGCCCTCCAAGTTCCCATCTTTGTTGCCCCATGACAAGTTCTTCTTCTCCGAGGATGGGACCCTCTTGGATGCTGCTCGTGTTCTCAACGAGTTTGGCTTCCCCTGGGACAAGCTTGGGGTGTTGTATGTGGAGAGTGGTTGTGTGTTCGGGTGGAGTGCCTCTGAGCTGAAGGGTATGCTGTGTGGGTTCAAAAGGTACGGTTTTTGCAATGTGCAGGTTGTGGGGATATGCTTGGCTTTCCCCTTTGTGTTTGATGGCCAAAAGGGTGCTGAGGTTGATGCTTTGTTTGGTGATCTGAGGGTGCTGTTTGGGGAGCTTGGTTTGGCTGAATGGGTTGAGGGGAAGGGGAATAGTGTGGAGGATTGGCATGGGGTGTGTAGGAAGATAAGGGTGTTTTATGATTTGAATGGTGGGAAGAAGAACATAGTGGAGCTCATTGGAGGAGGGAAGAACAATGGTACTGGTGTTGGTGTTGGTGTCATTGTGGAGCATGGGGAAGGGGAGTTGGTTAGAGCGGTTGAGTATTTTTGTAGGTTTGGTGCAAAGCAGGAGGATGTGGCACGGTTGATTCTCGAGGGGGAGGAGTTGTTGGGGCTGGATTTGGAGACACGGGTGGTCGATGTGTTGAAGCTGTTGAAACAATTTGGAATGAGCTCCAATGGTGTTGAGGATGTTAGGAAGGGTTATGCTCATGTGTTGGGGACTGTTAAGATGGGTAATTTGCCCAATGTGATGAGGGCTTTGGGTTTACATGAGTGGTTCTTTGATAAGATCAAGGATGGGAATCATGGTTTGTTAGTTGGTTATGTTGCAAGCTGTCCCAATGTGGGGCGGGATAAAGGCTATGTACTTAGTTTGAAGGCAATTCAGATGTCGAGAACACCGACTCACAATATGAGCAAGTTGGATTTCTTGCACTCCATTGGCTTTGGAGAAAATGCTTTGACCATGGATGTGTTCACTAAGATGCATGGAACGCGGGGCGAGTTGCACAAGAGATTTGATTGCCTTCTACGTTTTGGGATTGAATTCAACAAGGTCTGTAAGATGATCATGGTTCATCCTAAGATTCTGAGCCAAAACCCTGAATCTTTAGAGCAAAAGATTAATTTCTTCTGTCAGGAAATGGGACAGTCGGTGGAGGGTTTGGTCACTTTTCCGGCATTCTTGTGCTTTGACTTAGAGAACCGCATTAAGCCTAGGTACAGGTTCCATAGGTGGGTTGTTGAGAAGAGCCTGTCTTCCAAAAACTATTCCATTGCAAGCATAGTTGCAACAAGCAACAGGAATTTTGTTGCTCGCGCTTTTAGAATTCACCCAGCTGCTCCAAAACATTGGTTTGAGCAATTCTATCCAAACAATTTGCCATTGTGA 1665 0.4775 MFLHHRHVSKLSNIPWKYKKFAISQGQKALTDYLHATRCIPYAYADQIAKNSLTALTNLITKLGSFSAPHFPHNLNKFLRYNPINEFEFFFESIGIQPSKFPSLLPHDKFFFSEDGTLLDAARVLNEFGFPWDKLGVLYVESGCVFGWSASELKGMLCGFKRYGFCNVQVVGICLAFPFVFDGQKGAEVDALFGDLRVLFGELGLAEWVEGKGNSVEDWHGVCRKIRVFYDLNGGKKNIVELIGGGKNNGTGVGVGVIVEHGEGELVRAVEYFCRFGAKQEDVARLILEGEELLGLDLETRVVDVLKLLKQFGMSSNGVEDVRKGYAHVLGTVKMGNLPNVMRALGLHEWFFDKIKDGNHGLLVGYVASCPNVGRDKGYVLSLKAIQMSRTPTHNMSKLDFLHSIGFGENALTMDVFTKMHGTRGELHKRFDCLLRFGIEFNKVCKMIMVHPKILSQNPESLEQKINFFCQEMGQSVEGLVTFPAFLCFDLENRIKPRYRFHRWVVEKSLSSKNYSIASIVATSNRNFVARAFRIHPAAPKHWFEQFYPNNLPL 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01603 554 Pfam mTERF 423 528 IPR003690 GO:0003690|GO:0006355
Cca01g01603 554 PANTHER TRANSCRIPTION TERMINATION FACTOR MTEF18, MITOCHONDRIAL 8 547 - -
Cca01g01603 554 PANTHER CGI-12 PROTEIN-RELATED 8 547 IPR003690 GO:0003690|GO:0006355
Cca01g01603 554 SMART mt_12 477 509 IPR003690 GO:0003690|GO:0006355
Cca01g01603 554 SMART mt_12 284 315 IPR003690 GO:0003690|GO:0006355
Cca01g01603 554 SMART mt_12 445 476 IPR003690 GO:0003690|GO:0006355
Cca01g01603 554 Gene3D Transcription termination factor 3, mitochondrial 263 547 IPR038538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01603 Cca-Chr1 36518191 36523659 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Cca01g01603 mTERF 6.6e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01603 - - gmx:100812245 856.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g01603 01 36518191 36523659 Cca01g01603 01 36518191 36523659 ECH