Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01602 ATGGATGAAAAAGATGATGATGGGTTGAGTTTAGGGTTGAGTTTGAGGCTGGGGTGTGGAGAAAATGAAAATAGTCATCATTCTTTCAACATGCACAACCCTCCTCAATCGGTTTCAAACCAAAGAGCTTCTTTCAATAACTTGTTCCATTTTCATGATCGGAGCTCCGAAATGTGTTCGCTCCTCCGTGGAATAGACGTGAACGTGGCGCCGCCACTGTCGTCAACGGAGGCGCCGCCGGCGTGCGACGACGAGAACGGCGTTTTGTCGCCGAACAGCACTATATCGAGCATCagcgggaagcggagcgagagagaggtcaacggagacgagaacgagagggagTCGTGTTCTCGCGGCGGCGGAAGcgaccaagacgacggtgacaacgacggcgacacttcgaggaagaAGCTGAGGTTGTCGAAGGAACAGGCATTGGTGCTTGAAGAAACATTCAAGGAACACAACACCTTGAACCCGAAACAAAAGCAAGCTTTGGCAAAGCAGTTGAATCTGAGGCCTAGACAGGTGGAGGTGTGGTTTCAAAATAGAAGAGCAAGGACCAAGTTGAAGCAAACTGAAGTGGATTGTGAATACTGGAAGAGGTACTGTGAGAATCTAACTGAAGAGAATAGGAGGTTGCAAAAGGAAGTGCAAGAGCTTAGGGCATTGAAGTTATCACCACAGCTCTACATGCACATGAACCCTCCCACCACTCTTACAATGTGCCCTTCATGTGAGCGAGTTGCCGTCTCATCTGCATCCCCTTCCTCATCGGCCATCACACCCTCTGACCCGCCAGTGGCAAATCGCAACCCATTCGGCCCTGCTGTCCAGCGGCCGGTGCCTGTCAACCCCTGGGCGGCAATGTCAATTCGACGTCATGCCCCGCCATGA 900 0.4544 MDEKDDDGLSLGLSLRLGCGENENSHHSFNMHNPPQSVSNQRASFNNLFHFHDRSSEMCSLLRGIDVNVAPPLSSTEAPPACDDENGVLSPNSTISSISGKRSEREVNGDENERESCSRGGGSDQDDGDNDGDTSRKKLRLSKEQALVLEETFKEHNTLNPKQKQALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYWKRYCENLTEENRRLQKEVQELRALKLSPQLYMHMNPPTTLTMCPSCERVAVSSASPSSSAITPSDPPVANRNPFGPAVQRPVPVNPWAAMSIRRHAPP 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01602 299 Coils Coil 198 228 - -
Cca01g01602 299 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT3 9 293 - -
Cca01g01602 299 ProSitePatterns 'Homeobox' domain signature. 167 190 IPR017970 GO:0000981|GO:0006355
Cca01g01602 299 MobiDBLite consensus disorder prediction 103 136 - -
Cca01g01602 299 MobiDBLite consensus disorder prediction 74 136 - -
Cca01g01602 299 SMART HOX_1 134 196 IPR001356 GO:0003677
Cca01g01602 299 SMART halz 192 235 IPR003106 GO:0006355|GO:0043565
Cca01g01602 299 MobiDBLite consensus disorder prediction 255 283 - -
Cca01g01602 299 Gene3D - 119 195 - -
Cca01g01602 299 CDD homeodomain 136 193 IPR001356 GO:0003677
Cca01g01602 299 Pfam Homeodomain 136 190 IPR001356 GO:0003677
Cca01g01602 299 ProSiteProfiles 'Homeobox' domain profile. 132 192 IPR001356 GO:0003677
Cca01g01602 299 MobiDBLite consensus disorder prediction 87 102 - -
Cca01g01602 299 Pfam Homeobox associated leucine zipper 192 226 IPR003106 GO:0006355|GO:0043565
Cca01g01602 299 PANTHER - 9 293 - -
Cca01g01602 299 SUPERFAMILY Homeodomain-like 122 193 IPR009057 -
Cca01g01602 299 Pfam HD-ZIP protein N terminus 1 106 IPR006712 GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01602 Cca-Chr1 36456603 36460596 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01602 32 295 Homeobox Transcription Factor Family AT3G60390 62.950 1.24e-102 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Cca01g01602 HD-ZIP_N 5.9e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01602 K09338 - gmx:100798480 410.609
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g01602 01 36456603 36460596 Cca01g01602 01 36456603 36460596 ECH
Cca01g01602 01 36456603 36460596 Cca07g02104 07 48857658 48861807 PCT