Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01600 ATGCGTATTGCTGTCAAATTGTTGTTTGCTGGTGAACGAAAAGTCTGTGATCAGATATTTGAAGGATTTGACACACTTAGTGATCAGTGTTTTGCTGAAGTAACTAAAAACAACATTTCCATGCTGCTTAGTTTTGGAGAAGCAATTGCCAAAAGCAAGAGGTCACCTGAAAAGTTATTTGTACTTTTGGACATATTAATATGCTCTTTAAAGGCAGAGCTTGAACCAAAATAA 234 0.3547 MRIAVKLLFAGERKVCDQIFEGFDTLSDQCFAEVTKNNISMLLSFGEAIAKSKRSPEKLFVLLDILICSLKAELEPK 77
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01600 77 Pfam Exo70 exocyst complex subunit 1 68 IPR046364 GO:0000145|GO:0005546|GO:0006887
Cca01g01600 77 PANTHER EXOCYST COMPLEX PROTEIN EXO70 1 75 IPR004140 GO:0000145|GO:0006887
Cca01g01600 77 SUPERFAMILY Cullin repeat-like 4 66 IPR016159 -
Cca01g01600 77 Gene3D Exocyst complex component Exo70 1 76 - -
Cca01g01600 77 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 1 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01600 Cca-Chr1 36350424 36350993 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01600 1 75 EXO70 exocyst subunit family AT5G03540 75.325 1.65e-32 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01600 K07195 - gmx:100775958 121.709