Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01591 ATGAATTTCAACACCAATCTTGAATCCGATTACGCTCTTCTAGAATCAATTCAACGCTACCTCCTCGACGATAACGGAGACTTCAACGCTCTAACGGCGGTTATTGCATCACCTAACGGCGTTTACCCAAGGGAGAGTGATGGTGAGTCAACGTCCACCCTTCACGCCAATGCCGTTAATTCCCCGTCAGTTTTTTCCGAACAGGAGGCAACGGTTGCCACAGCGGCGCGTGGGGCTTCGTCTTCGGCGCGTGGGGGACACGCGCCTTATCAAAATTACAAGGGAGTGAGGCGTAGGCCTTGGGGTAAGTTTGCAGCTGAAATAAGGGACCCAAAGAGGAATGGGGCAAGGGTGTGGCTTGGGACTTATGACTCAGCTGAAGATGCTGCTTTGGCTTATGATCGAGCCGCTTTTGAAATGCGCGGCTCGAAAGCTAAGCTAAATTTTCCTCATTTGATCGGGTAA 465 0.5097 MNFNTNLESDYALLESIQRYLLDDNGDFNALTAVIASPNGVYPRESDGESTSTLHANAVNSPSVFSEQEATVATAARGASSSARGGHAPYQNYKGVRRRPWGKFAAEIRDPKRNGARVWLGTYDSAEDAALAYDRAAFEMRGSKAKLNFPHLIG 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01591 154 PANTHER DNA-BINDING DOMAIN 64 151 IPR044808 GO:0003700|GO:0009873
Cca01g01591 154 Pfam AP2 domain 92 142 IPR001471 GO:0003700|GO:0006355
Cca01g01591 154 CDD AP2 91 152 IPR001471 GO:0003700|GO:0006355
Cca01g01591 154 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 13 64 151 - -
Cca01g01591 154 SMART rav1_2 92 152 IPR001471 GO:0003700|GO:0006355
Cca01g01591 154 MobiDBLite consensus disorder prediction 70 94 - -
Cca01g01591 154 ProSiteProfiles AP2/ERF domain profile. 92 150 IPR001471 GO:0003700|GO:0006355
Cca01g01591 154 PRINTS Ethylene responsive element binding protein signature 93 104 IPR001471 GO:0003700|GO:0006355
Cca01g01591 154 PRINTS Ethylene responsive element binding protein signature 132 152 IPR001471 GO:0003700|GO:0006355
Cca01g01591 154 SUPERFAMILY DNA-binding domain 92 151 IPR016177 GO:0003677
Cca01g01591 154 Gene3D AP2/ERF domain 91 151 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01591 Cca-Chr1 35811311 35812111 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01591 77 154 AP2-EREBP Transcription Factor Family AT2G44840 74.074 5.09e-40 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Cca01g01591 AP2 4.7e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01591 K09286 - gmx:100806359 194.512
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g01591 01 35811311 35812111 Cca01g01591 01 35811311 35812111 ECH